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Page 1
Cross-organism analysis using InterMine.
Lyne R, Sullivan J, Butano D, Contrino S, Heimbach J, Hu F, Kalderimis A, Lyne M, Smith RN, Štěpán R, Balakrishnan R, Binkley G, Harris T, Karra K, Moxon SA, Motenko H, Neuhauser S, Ruzicka L, Cherry M, Richardson J, Stein L, Westerfield M, Worthey E, Micklem G. Lyne R, et al. Among authors: contrino s. Genesis. 2015 Aug;53(8):547-60. doi: 10.1002/dvg.22869. Epub 2015 Jul 8. Genesis. 2015. PMID: 26097192 Free PMC article. Review.
HumanMine: advanced data searching, analysis and cross-species comparison.
Lyne R, Bazaga A, Butano D, Contrino S, Heimbach J, Hu F, Kalderimis A, Lyne M, Reierskog K, Stepan R, Sullivan J, Wise A, Yehudi Y, Micklem G. Lyne R, et al. Among authors: contrino s. Database (Oxford). 2022 Jul 12;2022:baac054. doi: 10.1093/database/baac054. Database (Oxford). 2022. PMID: 35820040 Free PMC article.
Araport: the Arabidopsis information portal.
Krishnakumar V, Hanlon MR, Contrino S, Ferlanti ES, Karamycheva S, Kim M, Rosen BD, Cheng CY, Moreira W, Mock SA, Stubbs J, Sullivan JM, Krampis K, Miller JR, Micklem G, Vaughn M, Town CD. Krishnakumar V, et al. Among authors: contrino s. Nucleic Acids Res. 2015 Jan;43(Database issue):D1003-9. doi: 10.1093/nar/gku1200. Epub 2014 Nov 20. Nucleic Acids Res. 2015. PMID: 25414324 Free PMC article.
modMine: flexible access to modENCODE data.
Contrino S, Smith RN, Butano D, Carr A, Hu F, Lyne R, Rutherford K, Kalderimis A, Sullivan J, Carbon S, Kephart ET, Lloyd P, Stinson EO, Washington NL, Perry MD, Ruzanov P, Zha Z, Lewis SE, Stein LD, Micklem G. Contrino S, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D1082-8. doi: 10.1093/nar/gkr921. Epub 2011 Nov 12. Nucleic Acids Res. 2012. PMID: 22080565 Free PMC article.
InterMine: extensive web services for modern biology.
Kalderimis A, Lyne R, Butano D, Contrino S, Lyne M, Heimbach J, Hu F, Smith R, Stěpán R, Sullivan J, Micklem G. Kalderimis A, et al. Among authors: contrino s. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W468-72. doi: 10.1093/nar/gku301. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753429 Free PMC article.
Sharing sensitive data in life sciences: an overview of centralized and federated approaches.
Rujano MA, Boiten JW, Ohmann C, Canham S, Contrino S, David R, Ewbank J, Filippone C, Connellan C, Custers I, van Nuland R, Mayrhofer MT, Holub P, Álvarez EG, Bacry E, Hughes N, Freeberg MA, Schaffhauser B, Wagener H, Sánchez-Pla A, Bertolini G, Panagiotopoulou M. Rujano MA, et al. Among authors: contrino s. Brief Bioinform. 2024 May 23;25(4):bbae262. doi: 10.1093/bib/bbae262. Brief Bioinform. 2024. PMID: 38836701 Free PMC article. Review.
ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery.
Krishnakumar V, Contrino S, Cheng CY, Belyaeva I, Ferlanti ES, Miller JR, Vaughn MW, Micklem G, Town CD, Chan AP. Krishnakumar V, et al. Among authors: contrino s. Plant Cell Physiol. 2017 Jan 1;58(1):e4. doi: 10.1093/pcp/pcw200. Plant Cell Physiol. 2017. PMID: 28013278
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM 3rd, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washing… See abstract for full author list ➔ Gerstein MB, et al. Among authors: contrino s. Science. 2010 Dec 24;330(6012):1775-87. doi: 10.1126/science.1196914. Epub 2010 Dec 22. Science. 2010. PMID: 21177976 Free PMC article.
Identification of functional elements and regulatory circuits by Drosophila modENCODE.
modENCODE Consortium; Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M. modENCODE Consortium, et al. Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22. Science. 2010. PMID: 21177974 Free PMC article.
20 results