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BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA.
Gabriel L, Brůna T, Hoff KJ, Ebel M, Lomsadze A, Borodovsky M, Stanke M. Gabriel L, et al. Among authors: bruna t. bioRxiv [Preprint]. 2024 Feb 29:2023.06.10.544449. doi: 10.1101/2023.06.10.544449. bioRxiv. 2024. Update in: Genome Res. 2024 Jun 25;34(5):769-777. doi: 10.1101/gr.278090.123. PMID: 37398387 Free PMC article. Updated. Preprint.
TSEBRA: transcript selector for BRAKER.
Gabriel L, Hoff KJ, Brůna T, Borodovsky M, Stanke M. Gabriel L, et al. Among authors: bruna t. BMC Bioinformatics. 2021 Nov 25;22(1):566. doi: 10.1186/s12859-021-04482-0. BMC Bioinformatics. 2021. PMID: 34823473 Free PMC article.
Galba: genome annotation with miniprot and AUGUSTUS.
Brůna T, Li H, Guhlin J, Honsel D, Herbold S, Stanke M, Nenasheva N, Ebel M, Gabriel L, Hoff KJ. Brůna T, et al. BMC Bioinformatics. 2023 Aug 31;24(1):327. doi: 10.1186/s12859-023-05449-z. BMC Bioinformatics. 2023. PMID: 37653395 Free PMC article.
A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. "Hillquist").
Brůna T, Aryal R, Dudchenko O, Sargent DJ, Mead D, Buti M, Cavallini A, Hytönen T, Andrés J, Pham M, Weisz D, Mascagni F, Usai G, Natali L, Bassil N, Fernandez GE, Lomsadze A, Armour M, Olukolu B, Poorten T, Britton C, Davik J, Ashrafi H, Aiden EL, Borodovsky M, Worthington M. Brůna T, et al. G3 (Bethesda). 2023 Feb 9;13(2):jkac289. doi: 10.1093/g3journal/jkac289. G3 (Bethesda). 2023. PMID: 36331334 Free PMC article.
30 results