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A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. Cell Genom. 2024 Apr 10;4(4):100527. doi: 10.1016/j.xgen.2024.100527. Epub 2024 Mar 26. Cell Genom. 2024. PMID: 38537634 Free PMC article.
Genome-wide association study of delay discounting in Heterogenous Stock rats.
Lara MK, Chitre AS, Chen D, Johnson BB, Nguyen KM, Cohen KA, Muckadam SA, Lin B, Ziegler S, Beeson A, Sanches T, Solberg Woods LC, Polesskaya O, Palmer AA, Mitchell SH. Lara MK, et al. bioRxiv [Preprint]. 2023 Dec 13:2023.12.12.570851. doi: 10.1101/2023.12.12.570851. bioRxiv. 2023. Update in: Genes Brain Behav. 2024 Aug;23(4):e12909. doi: 10.1111/gbb.12909 PMID: 38168347 Free PMC article. Updated. Preprint.
TRTools: a toolkit for genome-wide analysis of tandem repeats.
Mousavi N, Margoliash J, Pusarla N, Saini S, Yanicky R, Gymrek M. Mousavi N, et al. Bioinformatics. 2021 May 5;37(5):731-733. doi: 10.1093/bioinformatics/btaa736. Bioinformatics. 2021. PMID: 32805020 Free PMC article.
A natural mutator allele shapes mutation spectrum variation in mice.
Sasani TA, Ashbrook DG, Beichman AC, Lu L, Palmer AA, Williams RW, Pritchard JK, Harris K. Sasani TA, et al. Nature. 2022 May;605(7910):497-502. doi: 10.1038/s41586-022-04701-5. Epub 2022 May 11. Nature. 2022. PMID: 35545679 Free PMC article.
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. bioRxiv [Preprint]. 2023 Sep 28:2023.04.13.536694. doi: 10.1101/2023.04.13.536694. bioRxiv. 2023. Update in: Cell Genom. 2024 Apr 10;4(4):100527. doi: 10.1016/j.xgen.2024.100527 PMID: 37214860 Free PMC article. Updated. Preprint.
Genome-wide association study of delay discounting in Heterogeneous Stock rats.
Lara MK, Chitre AS, Chen D, Johnson BB, Nguyen KM, Cohen KA, Muckadam SA, Lin B, Ziegler S, Beeson A, Sanches TM, Solberg Woods LC, Polesskaya O, Palmer AA, Mitchell SH. Lara MK, et al. Genes Brain Behav. 2024 Aug;23(4):e12909. doi: 10.1111/gbb.12909. Genes Brain Behav. 2024. PMID: 39119916 Free PMC article.
12 results