R01 HG009909/HG/NHGRI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2018	1
2019	2
2020	1
2021	1
2022	4
2023	3
2024	0

1

Integrated single-cell chromatin and transcriptomic analyses of human scalp identify gene-regulatory programs and critical cell types for hair and skin diseases.

Ober-Reynolds B, Wang C, Ko JM, Rios EJ, Aasi SZ, Davis MM, Oro AE, Greenleaf WJ. Ober-Reynolds B, et al. Nat Genet. 2023 Aug;55(8):1288-1300. doi: 10.1038/s41588-023-01445-4. Epub 2023 Jul 27. Nat Genet. 2023. PMID: 37500727 Free PMC article.

2

From telomere to telomere: The transcriptional and epigenetic state of human repeat elements.

Hoyt SJ, Storer JM, Hartley GA, Grady PGS, Gershman A, de Lima LG, Limouse C, Halabian R, Wojenski L, Rodriguez M, Altemose N, Rhie A, Core LJ, Gerton JL, Makalowski W, Olson D, Rosen J, Smit AFA, Straight AF, Vollger MR, Wheeler TJ, Schatz MC, Eichler EE, Phillippy AM, Timp W, Miga KH, O'Neill RJ. Hoyt SJ, et al. Science. 2022 Apr;376(6588):eabk3112. doi: 10.1126/science.abk3112. Epub 2022 Apr 1. Science. 2022. PMID: 35357925 Free PMC article.

3

Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions.

Limouse C, Smith OK, Jukam D, Fryer KA, Greenleaf WJ, Straight AF. Limouse C, et al. Nat Commun. 2023 Sep 28;14(1):6073. doi: 10.1038/s41467-023-41848-9. Nat Commun. 2023. PMID: 37770513 Free PMC article.

4

High-throughput biochemistry in RNA sequence space: predicting structure and function.

Marklund E, Ke Y, Greenleaf WJ. Marklund E, et al. Nat Rev Genet. 2023 Jun;24(6):401-414. doi: 10.1038/s41576-022-00567-5. Epub 2023 Jan 12. Nat Rev Genet. 2023. PMID: 36635406 Review.

5

Chromatin-Associated RNA Sequencing (ChAR-seq).

Jukam D, Limouse C, Smith OK, Risca VI, Bell JC, Straight AF. Jukam D, et al. Curr Protoc Mol Biol. 2019 Apr;126(1):e87. doi: 10.1002/cpmb.87. Epub 2019 Feb 20. Curr Protoc Mol Biol. 2019. PMID: 30786161 Free PMC article.

6

Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts.

Bell JC, Jukam D, Teran NA, Risca VI, Smith OK, Johnson WL, Skotheim JM, Greenleaf WJ, Straight AF. Bell JC, et al. Elife. 2018 Apr 12;7:e27024. doi: 10.7554/eLife.27024. Elife. 2018. PMID: 29648534 Free PMC article.

7

Mapping Transcriptome-Wide and Genome-Wide RNA-DNA Contacts with Chromatin-Associated RNA Sequencing (ChAR-seq).

Limouse C, Jukam D, Smith OK, Fryer KA, Straight AF. Limouse C, et al. Methods Mol Biol. 2020;2161:115-142. doi: 10.1007/978-1-0716-0680-3_10. Methods Mol Biol. 2020. PMID: 32681510 Free PMC article.

8

Quantification of Cas9 binding and cleavage across diverse guide sequences maps landscapes of target engagement.

Boyle EA, Becker WR, Bai HB, Chen JS, Doudna JA, Greenleaf WJ. Boyle EA, et al. Sci Adv. 2021 Feb 19;7(8):eabe5496. doi: 10.1126/sciadv.abe5496. Print 2021 Feb. Sci Adv. 2021. PMID: 33608277 Free PMC article.

9

High-throughput biochemical profiling reveals functional adaptation of a bacterial Argonaute.

Ober-Reynolds B, Becker WR, Jouravleva K, Jolly SM, Zamore PD, Greenleaf WJ. Ober-Reynolds B, et al. Mol Cell. 2022 Apr 7;82(7):1329-1342.e8. doi: 10.1016/j.molcel.2022.02.026. Epub 2022 Mar 16. Mol Cell. 2022. PMID: 35298909 Free PMC article.

10

Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular switches.

Andreasson JOL, Gotrik MR, Wu MJ, Wayment-Steele HK, Kladwang W, Portela F, Wellington-Oguri R; Eterna Participants; Das R, Greenleaf WJ. Andreasson JOL, et al. Proc Natl Acad Sci U S A. 2022 May 3;119(18):e2112979119. doi: 10.1073/pnas.2112979119. Epub 2022 Apr 26. Proc Natl Acad Sci U S A. 2022. PMID: 35471911 Free PMC article.

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