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Page 1
Shotgun metagenomics, from sampling to analysis.
Quince C, Walker AW, Simpson JT, Loman NJ, Segata N. Quince C, et al. Nat Biotechnol. 2017 Sep 12;35(9):833-844. doi: 10.1038/nbt.3935. Nat Biotechnol. 2017. PMID: 28898207 Review.
Enterotypes in the landscape of gut microbial community composition.
Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P. Costea PI, et al. Nat Microbiol. 2018 Jan;3(1):8-16. doi: 10.1038/s41564-017-0072-8. Epub 2017 Dec 18. Nat Microbiol. 2018. PMID: 29255284 Free PMC article. Review.
Treatment of Active Crohn's Disease With an Ordinary Food-based Diet That Replicates Exclusive Enteral Nutrition.
Svolos V, Hansen R, Nichols B, Quince C, Ijaz UZ, Papadopoulou RT, Edwards CA, Watson D, Alghamdi A, Brejnrod A, Ansalone C, Duncan H, Gervais L, Tayler R, Salmond J, Bolognini D, Klopfleisch R, Gaya DR, Milling S, Russell RK, Gerasimidis K. Svolos V, et al. Gastroenterology. 2019 Apr;156(5):1354-1367.e6. doi: 10.1053/j.gastro.2018.12.002. Epub 2018 Dec 11. Gastroenterology. 2019. PMID: 30550821 Free article. Clinical Trial.
Reply.
Gerasimidis K, Svolos V, Nichols B, Papadopoulou R, Quince C, Ijaz UZ, Milling S, Gaya DR, Russell RK, Hansen R. Gerasimidis K, et al. Gastroenterology. 2019 Oct;157(4):1161-1162. doi: 10.1053/j.gastro.2019.08.015. Epub 2019 Aug 10. Gastroenterology. 2019. PMID: 31408620 Free article. No abstract available.
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.
Pasolli E, Asnicar F, Manara S, Zolfo M, Karcher N, Armanini F, Beghini F, Manghi P, Tett A, Ghensi P, Collado MC, Rice BL, DuLong C, Morgan XC, Golden CD, Quince C, Huttenhower C, Segata N. Pasolli E, et al. Cell. 2019 Jan 24;176(3):649-662.e20. doi: 10.1016/j.cell.2019.01.001. Epub 2019 Jan 17. Cell. 2019. PMID: 30661755 Free PMC article.
Recent mixing of Vibrio parahaemolyticus populations.
Yang C, Pei X, Wu Y, Yan L, Yan Y, Song Y, Coyle NM, Martinez-Urtaza J, Quince C, Hu Q, Jiang M, Feil E, Yang D, Song Y, Zhou D, Yang R, Falush D, Cui Y. Yang C, et al. ISME J. 2019 Oct;13(10):2578-2588. doi: 10.1038/s41396-019-0461-5. Epub 2019 Jun 24. ISME J. 2019. PMID: 31235840 Free PMC article.
STRONG: metagenomics strain resolution on assembly graphs.
Quince C, Nurk S, Raguideau S, James R, Soyer OS, Summers JK, Limasset A, Eren AM, Chikhi R, Darling AE. Quince C, et al. Genome Biol. 2021 Jul 26;22(1):214. doi: 10.1186/s13059-021-02419-7. Genome Biol. 2021. PMID: 34311761 Free PMC article.
Challenges in microbial ecology: building predictive understanding of community function and dynamics.
Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H; Isaac Newton Institute Fellows; Soyer OS. Widder S, et al. ISME J. 2016 Nov;10(11):2557-2568. doi: 10.1038/ismej.2016.45. Epub 2016 Mar 29. ISME J. 2016. PMID: 27022995 Free PMC article. Review.
30 results