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Rapid image deconvolution and multiview fusion for optical microscopy.
Guo M, Li Y, Su Y, Lambert T, Nogare DD, Moyle MW, Duncan LH, Ikegami R, Santella A, Rey-Suarez I, Green D, Beiriger A, Chen J, Vishwasrao H, Ganesan S, Prince V, Waters JC, Annunziata CM, Hafner M, Mohler WA, Chitnis AB, Upadhyaya A, Usdin TB, Bao Z, Colón-Ramos D, La Riviere P, Liu H, Wu Y, Shroff H. Guo M, et al. Nat Biotechnol. 2020 Nov;38(11):1337-1346. doi: 10.1038/s41587-020-0560-x. Epub 2020 Jun 29. Nat Biotechnol. 2020. PMID: 32601431 Free PMC article.
Structural and developmental principles of neuropil assembly in C. elegans.
Moyle MW, Barnes KM, Kuchroo M, Gonopolskiy A, Duncan LH, Sengupta T, Shao L, Guo M, Santella A, Christensen R, Kumar A, Wu Y, Moon KR, Wolf G, Krishnaswamy S, Bao Z, Shroff H, Mohler WA, Colón-Ramos DA. Moyle MW, et al. Nature. 2021 Mar;591(7848):99-104. doi: 10.1038/s41586-020-03169-5. Epub 2021 Feb 24. Nature. 2021. PMID: 33627875 Free PMC article.
Coarse Graining of Data via Inhomogeneous Diffusion Condensation.
Brugnone N, Gonopolskiy A, Moyle MW, Kuchroo M, van Dijk D, Moon KR, Colon-Ramos D, Wolf G, Hirn MJ, Krishnaswamy S. Brugnone N, et al. Proc IEEE Int Conf Big Data. 2019 Dec;2019:2624-2633. doi: 10.1109/BigData47090.2019.9006013. Epub 2020 Feb 24. Proc IEEE Int Conf Big Data. 2019. PMID: 32747879 Free PMC article.
Incorporating the image formation process into deep learning improves network performance.
Li Y, Su Y, Guo M, Han X, Liu J, Vishwasrao HD, Li X, Christensen R, Sengupta T, Moyle MW, Rey-Suarez I, Chen J, Upadhyaya A, Usdin TB, Colón-Ramos DA, Liu H, Wu Y, Shroff H. Li Y, et al. Nat Methods. 2022 Nov;19(11):1427-1437. doi: 10.1038/s41592-022-01652-7. Epub 2022 Oct 31. Nat Methods. 2022. PMID: 36316563 Free PMC article.