F32 HG002325/HG/NHGRI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2002	1
2003	5
2004	3
2005	1
2024	0

1

Cross-species sequence comparisons: a review of methods and available resources.

Frazer KA, Elnitski L, Church DM, Dubchak I, Hardison RC. Frazer KA, et al. Genome Res. 2003 Jan;13(1):1-12. doi: 10.1101/gr.222003. Genome Res. 2003. PMID: 12529301 Free PMC article. Review.

2

MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences.

Schwartz S, Elnitski L, Li M, Weirauch M, Riemer C, Smit A; NISC Comparative Sequencing Program; Green ED, Hardison RC, Miller W. Schwartz S, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3518-24. doi: 10.1093/nar/gkg579. Nucleic Acids Res. 2003. PMID: 12824357 Free PMC article.

3

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution.

Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D, Schwartz S, Furey TS, Whelan S, Goldman N, Smit A, Miller W, Chiaromonte F, Haussler D. Hardison RC, et al. Genome Res. 2003 Jan;13(1):13-26. doi: 10.1101/gr.844103. Genome Res. 2003. PMID: 12529302 Free PMC article.

4

Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat.

Kolbe D, Taylor J, Elnitski L, Eswara P, Li J, Miller W, Hardison R, Chiaromonte F. Kolbe D, et al. Genome Res. 2004 Apr;14(4):700-7. doi: 10.1101/gr.1976004. Genome Res. 2004. PMID: 15060013 Free PMC article.

5

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences.

King DC, Taylor J, Elnitski L, Chiaromonte F, Miller W, Hardison RC. King DC, et al. Genome Res. 2005 Aug;15(8):1051-60. doi: 10.1101/gr.3642605. Epub 2005 Jul 15. Genome Res. 2005. PMID: 16024817 Free PMC article.

6

Aligning multiple genomic sequences with the threaded blockset aligner.

Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W. Blanchette M, et al. Genome Res. 2004 Apr;14(4):708-15. doi: 10.1101/gr.1933104. Genome Res. 2004. PMID: 15060014 Free PMC article.

7

Multi-species sequence comparison reveals dynamic evolution of the elastin gene that has involved purifying selection and lineage-specific insertions/deletions.

Piontkivska H, Zhang Y, Green ED; NISC Comparative Sequencing Program; Elnitski L. Piontkivska H, et al. BMC Genomics. 2004 May 18;5(1):31. doi: 10.1186/1471-2164-5-31. BMC Genomics. 2004. PMID: 15149554 Free PMC article.

8

Distinguishing regulatory DNA from neutral sites.

Elnitski L, Hardison RC, Li J, Yang S, Kolbe D, Eswara P, O'Connor MJ, Schwartz S, Miller W, Chiaromonte F. Elnitski L, et al. Genome Res. 2003 Jan;13(1):64-72. doi: 10.1101/gr.817703. Genome Res. 2003. PMID: 12529307 Free PMC article.

9

Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome.

DeSilva U, Elnitski L, Idol JR, Doyle JL, Gan W, Thomas JW, Schwartz S, Dietrich NL, Beckstrom-Sternberg SM, McDowell JC, Blakesley RW, Bouffard GG, Thomas PJ, Touchman JW, Miller W, Green ED. DeSilva U, et al. Genome Res. 2002 Jan;12(1):3-15. doi: 10.1101/gr.214802. Genome Res. 2002. PMID: 11779826 Free PMC article.

10

GALA, a database for genomic sequence alignments and annotations.

Giardine B, Elnitski L, Riemer C, Makalowska I, Schwartz S, Miller W, Hardison RC. Giardine B, et al. Genome Res. 2003 Apr;13(4):732-41. doi: 10.1101/gr.603103. Genome Res. 2003. PMID: 12671007 Free PMC article.

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