Sjölander K - Search Results

1

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology.

Sjölander K, Karplus K, Brown M, Hughey R, Krogh A, Mian IS, Haussler D. Sjölander K, et al. Comput Appl Biosci. 1996 Aug;12(4):327-45. doi: 10.1093/bioinformatics/12.4.327. Comput Appl Biosci. 1996. PMID: 8902360

2

Using Dirichlet mixture priors to derive hidden Markov models for protein families.

Brown M, Hughey R, Krogh A, Mian IS, Sjölander K, Haussler D. Brown M, et al. Among authors: sjolander k. Proc Int Conf Intell Syst Mol Biol. 1993;1:47-55. Proc Int Conf Intell Syst Mol Biol. 1993. PMID: 7584370

3

Stochastic context-free grammars for tRNA modeling.

Sakakibara Y, Brown M, Hughey R, Mian IS, Sjölander K, Underwood RC, Haussler D. Sakakibara Y, et al. Among authors: sjolander k. Nucleic Acids Res. 1994 Nov 25;22(23):5112-20. doi: 10.1093/nar/22.23.5112. Nucleic Acids Res. 1994. PMID: 7800507 Free PMC article.

4

Hidden Markov models in computational biology. Applications to protein modeling.

Krogh A, Brown M, Mian IS, Sjölander K, Haussler D. Krogh A, et al. Among authors: sjolander k. J Mol Biol. 1994 Feb 4;235(5):1501-31. doi: 10.1006/jmbi.1994.1104. J Mol Biol. 1994. PMID: 8107089

5

Predicting protein structure using hidden Markov models.

Karplus K, Sjölander K, Barrett C, Cline M, Haussler D, Hughey R, Holm L, Sander C. Karplus K, et al. Among authors: sjolander k. Proteins. 1997;Suppl 1:134-9. doi: 10.1002/(sici)1097-0134(1997)1+<134::aid-prot18>3.3.co;2-q. Proteins. 1997. PMID: 9485505

6

Basic protein sequence analysis.

Krishnamurthy N, Sjölander KV. Krishnamurthy N, et al. Curr Protoc Protein Sci. 2005 Sep;Chapter 2:2.11.1-2.11.24. doi: 10.1002/0471140864.ps0211s41. Curr Protoc Protein Sci. 2005. PMID: 18429280

7

Phylogenetic inference in protein superfamilies: analysis of SH2 domains.

Sjölander K. Sjölander K. Proc Int Conf Intell Syst Mol Biol. 1998;6:165-74. Proc Int Conf Intell Syst Mol Biol. 1998. PMID: 9783222

8

Simultaneous sequence alignment and tree construction using hidden Markov models.

Edgar RC, Sjölander K. Edgar RC, et al. Among authors: sjolander k. Pac Symp Biocomput. 2003:180-91. Pac Symp Biocomput. 2003. PMID: 12603027 Free article.

9

Phylogenomic inference of protein molecular function.

Krishnamurthy N, Sjölander K. Krishnamurthy N, et al. Among authors: sjolander k. Curr Protoc Bioinformatics. 2005 Oct;Chapter 6:Unit 6.9. doi: 10.1002/0471250953.bi0609s11. Curr Protoc Bioinformatics. 2005. PMID: 18428751

10

INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification.

Sankararaman S, Sjölander K. Sankararaman S, et al. Among authors: sjolander k. Bioinformatics. 2008 Nov 1;24(21):2445-52. doi: 10.1093/bioinformatics/btn474. Epub 2008 Sep 6. Bioinformatics. 2008. PMID: 18776193 Free PMC article.

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