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Page 1
A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material.
Daniels C, Abdulkadir A, Cleveland MH, McDaniel JH, Jaspez D, Rubio-Rodriguez LA, Munoz-Barrera A, Lorenzo-Salazar JM, Flores C, Yoo B, Sahraeian SME, Wang Y, Rossi M, Visvanath A, Murray L, Chen WT, Catreux S, Han J, Mehio R, Parnaby G, Carroll A, Chang PC, Shafin K, Cook DE, Kolesnikov A, Brambrink L, Mootor MFE, Patel Y, Yamaguchi TN, Boutros PC, Sienkiewicz K, Foox J, Mason CE, Lajoie B, Ruiz-Perez CA, Kruglyak S, Zook JM, Olson ND. Daniels C, et al. Among authors: ruiz perez ca. bioRxiv [Preprint]. 2024 Dec 5:2024.12.02.625685. doi: 10.1101/2024.12.02.625685. bioRxiv. 2024. PMID: 39677813 Free PMC article. Preprint.
Proof-of-concept evaluation of next-generation sequencing-based liquid biopsy for non-invasive cancer detection in cats.
Ruiz-Perez CA, Nakashe P, Marshall MA, Marass F, Tang T, McLennan LM, Kroll M, Flesner BK, Gray S, Rafalko JM, Grosu DS, Hicks SC, Tynan JA, Tsui DWY, Flory A, Kruglyak KM. Ruiz-Perez CA, et al. Front Vet Sci. 2024 Sep 13;11:1394686. doi: 10.3389/fvets.2024.1394686. eCollection 2024. Front Vet Sci. 2024. PMID: 39346958 Free PMC article.
Clinical validation of a blood-based liquid biopsy test integrating cell-free DNA quantification and next-generation sequencing for cancer screening in dogs.
Flory A, Ruiz-Perez CA, Clavere-Graciette AG, Rafalko JM, O'Kell AL, Flesner BK, McLennan LM, Hicks SC, Nakashe P, Phelps-Dunn A, DiMarzio LR, Warren CD, Cohen TA, Chibuk J, Chorny I, Grosu DS, Tsui DWY, Tynan JA, Kruglyak KM. Flory A, et al. Among authors: ruiz perez ca. J Am Vet Med Assoc. 2024 Feb 7;262(5):665-673. doi: 10.2460/javma.23.10.0564. Print 2024 May 1. J Am Vet Med Assoc. 2024. PMID: 38324993
Next-generation sequencing-based liquid biopsy may be used for detection of residual disease and cancer recurrence monitoring in dogs.
McCleary-Wheeler AL, Fiaux PC, Flesner BK, Ruiz-Perez CA, McLennan LM, Tynan JA, Hicks SC, Rafalko JM, Grosu DS, Chibuk J, O'Kell AL, Cohen TA, Chorny I, Tsui DWY, Kruglyak KM, Flory A. McCleary-Wheeler AL, et al. Among authors: ruiz perez ca. Am J Vet Res. 2023 Dec 28:1-8. doi: 10.2460/ajvr.23.07.0163. Online ahead of print. Am J Vet Res. 2023. PMID: 38150822 Free article.
Detection of Age-Related Somatic Alterations in Canine Blood Using Next-Generation Sequencing-Based Liquid Biopsy: An Analysis of over 4800 Dogs.
Kruglyak KM, O'Kell AL, Cohen TA, Marshall MA, Ruiz-Perez CA, Marass F, Tynan JA, Hicks SC, Lytle KM, Phelps-Dunn A, Brandstetter G, Warren CD, DiMarzio LR, Rosentel MC, Wong LK, McLennan LM, Rafalko JM, Grosu DS, Chibuk J, Chorny I, McCleary-Wheeler AL, Flory A, Tsui DWY. Kruglyak KM, et al. Among authors: ruiz perez ca. Vet Sci. 2023 Jul 11;10(7):455. doi: 10.3390/vetsci10070455. Vet Sci. 2023. PMID: 37505860 Free PMC article.
Clinical experience with next-generation sequencing-based liquid biopsy testing for cancer detection in dogs: a review of 1,500 consecutive clinical cases.
O'Kell AL, Lytle KM, Cohen TA, Wong LK, Sandford E, Rafalko JM, Brandstetter G, DiMarzio LR, Phelps-Dunn A, Rosentel MC, Warren CD, McCleary-Wheeler AL, Fiaux PC, Marass F, Marshall MA, Ruiz-Perez CA, Kruglyak KM, Tynan JA, Hicks SC, Grosu DS, Chibuk J, Chorny I, Tsui DWY, Flory A. O'Kell AL, et al. Among authors: ruiz perez ca. J Am Vet Med Assoc. 2023 Mar 17;261(6):827-836. doi: 10.2460/javma.22.11.0526. Print 2023 Jun 1. J Am Vet Med Assoc. 2023. PMID: 36965477 Review.
Clinical validation of a next-generation sequencing-based multi-cancer early detection "liquid biopsy" blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study.
Flory A, Kruglyak KM, Tynan JA, McLennan LM, Rafalko JM, Fiaux PC, Hernandez GE, Marass F, Nakashe P, Ruiz-Perez CA, Fath DM, Jennings T, Motalli-Pepio R, Wotrang K, McCleary-Wheeler AL, Lana S, Phillips B, Flesner BK, Leibman NF, LaDue T, Tripp CD, Coomber BL, Woods JP, Miller M, Aiken SW, Wolf-Ringwall A, Borgatti A, Kraska K, Thomson CB, Kosanovich Cahalane A, Murray RL, Kisseberth WC, Camps-Palau MA, Floch F, Beaudu-Lange C, Klajer-Peres A, Keravel O, Fribourg-Blanc LA, Mazetier PC, Marco A, McLeod MB, Portillo E, Clark TS, Judd S, Feinberg CK, Benitez M, Runyan C, Hackett L, Lafey S, Richardson D, Vineyard S, Tefend Campbell M, Dharajiya N, Jensen TJ, van den Boom D, Diaz LA Jr, Grosu DS, Polk A, Marsal K, Hicks SC, Lytle KM, Holtvoigt L, Chibuk J, Chorny I, Tsui DWY. Flory A, et al. Among authors: ruiz perez ca. PLoS One. 2022 Apr 26;17(4):e0266623. doi: 10.1371/journal.pone.0266623. eCollection 2022. PLoS One. 2022. PMID: 35471999 Free PMC article.
Transcriptomic and rRNA:rDNA Signatures of Environmental versus Enteric Enterococcus faecalis Isolates under Oligotrophic Freshwater Conditions.
Suttner B, Kim M, Johnston ER, Orellana LH, Ruiz-Perez CA, Rodriguez-R LM, Hatt JK, Brown J, Santo Domingo JW, Konstantinidis KT. Suttner B, et al. Among authors: ruiz perez ca. Microbiol Spectr. 2021 Oct 31;9(2):e0081721. doi: 10.1128/Spectrum.00817-21. Epub 2021 Oct 20. Microbiol Spectr. 2021. PMID: 34668732 Free PMC article.
17 results