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Page 1
RNA-Puzzles Round V: blind predictions of 23 RNA structures.
Bu F, Adam Y, Adamiak RW, Antczak M, de Aquino BRH, Badepally NG, Batey RT, Baulin EF, Boinski P, Boniecki MJ, Bujnicki JM, Carpenter KA, Chacon J, Chen SJ, Chiu W, Cordero P, Das NK, Das R, Dawson WK, DiMaio F, Ding F, Dock-Bregeon AC, Dokholyan NV, Dror RO, Dunin-Horkawicz S, Eismann S, Ennifar E, Esmaeeli R, Farsani MA, Ferré-D'Amaré AR, Geniesse C, Ghanim GE, Guzman HV, Hood IV, Huang L, Jain DS, Jaryani F, Jin L, Joshi A, Karelina M, Kieft JS, Kladwang W, Kmiecik S, Koirala D, Kollmann M, Kretsch RC, Kurciński M, Li J, Li S, Magnus M, Masquida B, Moafinejad SN, Mondal A, Mukherjee S, Nguyen THD, Nikolaev G, Nithin C, Nye G, Pandaranadar Jeyeram IPN, Perez A, Pham P, Piccirilli JA, Pilla SP, Pluta R, Poblete S, Ponce-Salvatierra A, Popenda M, Popenda L, Pucci F, Rangan R, Ray A, Ren A, Sarzynska J, Sha CM, Stefaniak F, Su Z, Suddala KC, Szachniuk M, Townshend R, Trachman RJ 3rd, Wang J, Wang W, Watkins A, Wirecki TK, Xiao Y, Xiong P, Xiong Y, Yang J, Yesselman JD, Zhang J, Zhang Y, Zhang Z, Zhou Y, Zok T, Zhang D, Zhang S, Żyła A, Westhof E, Miao Z. Bu F, et al. Among authors: kurcinski m. Nat Methods. 2024 Dec 2. doi: 10.1038/s41592-024-02543-9. Online ahead of print. Nat Methods. 2024. PMID: 39623050
Structure prediction of linear and cyclic peptides using CABS-flex.
Badaczewska-Dawid A, Wróblewski K, Kurcinski M, Kmiecik S. Badaczewska-Dawid A, et al. Among authors: kurcinski m. Brief Bioinform. 2024 Jan 22;25(2):bbae003. doi: 10.1093/bib/bbae003. Brief Bioinform. 2024. PMID: 38305457 Free PMC article.
Flexible docking of peptides to proteins using CABS-dock.
Kurcinski M, Badaczewska-Dawid A, Kolinski M, Kolinski A, Kmiecik S. Kurcinski M, et al. Protein Sci. 2020 Jan;29(1):211-222. doi: 10.1002/pro.3771. Epub 2019 Nov 11. Protein Sci. 2020. PMID: 31682301 Free PMC article.
CABS-dock standalone: a toolbox for flexible protein-peptide docking.
Kurcinski M, Pawel Ciemny M, Oleniecki T, Kuriata A, Badaczewska-Dawid AE, Kolinski A, Kmiecik S. Kurcinski M, et al. Bioinformatics. 2019 Oct 15;35(20):4170-4172. doi: 10.1093/bioinformatics/btz185. Bioinformatics. 2019. PMID: 30865258 Free PMC article.
Protein-peptide docking using CABS-dock and contact information.
Blaszczyk M, Ciemny MP, Kolinski A, Kurcinski M, Kmiecik S. Blaszczyk M, et al. Among authors: kurcinski m. Brief Bioinform. 2019 Nov 27;20(6):2299-2305. doi: 10.1093/bib/bby080. Brief Bioinform. 2019. PMID: 30247502 Free PMC article.
29 results