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Page 1
Perspectives on Codebook: sequence specificity of uncharacterized human transcription factors.
Jolma A, Laverty KU, Fathi A, Yang AWH, Yellan I, Vorontsov IE, Inukai S, Kribelbauer-Swietek JF, Gralak AJ, Razavi R, Albu M, Brechalov A, Patel ZM, Nozdrin V, Meshcheryakov G, Kozin I, Abramov S, Boytsov A; Codebook Consortium; Fornes O, Makeev VJ, Grau J, Grosse I, Bucher P, Deplancke B, Kulakovskiy IV, Hughes TR. Jolma A, et al. Among authors: meshcheryakov g. bioRxiv [Preprint]. 2024 Nov 12:2024.11.11.622097. doi: 10.1101/2024.11.11.622097. bioRxiv. 2024. PMID: 39605729 Free PMC article. Preprint.
A community effort to optimize sequence-based deep learning models of gene regulation.
Rafi AM, Nogina D, Penzar D, Lee D, Lee D, Kim N, Kim S, Kim D, Shin Y, Kwak IY, Meshcheryakov G, Lando A, Zinkevich A, Kim BC, Lee J, Kang T, Vaishnav ED, Yadollahpour P; Random Promoter DREAM Challenge Consortium; Kim S, Albrecht J, Regev A, Gong W, Kulakovskiy IV, Meyer P, de Boer CG. Rafi AM, et al. Among authors: meshcheryakov g. Nat Biotechnol. 2024 Oct 11. doi: 10.1038/s41587-024-02414-w. Online ahead of print. Nat Biotechnol. 2024. PMID: 39394483
Evaluation and optimization of sequence-based gene regulatory deep learning models.
Rafi AM, Nogina D, Penzar D, Lee D, Lee D, Kim N, Kim S, Kim D, Shin Y, Kwak IY, Meshcheryakov G, Lando A, Zinkevich A, Kim BC, Lee J, Kang T, Vaishnav ED, Yadollahpour P; Random Promoter DREAM Challenge Consortium; Kim S, Albrecht J, Regev A, Gong W, Kulakovskiy IV, Meyer P, de Boer C. Rafi AM, et al. Among authors: meshcheryakov g. bioRxiv [Preprint]. 2024 Feb 17:2023.04.26.538471. doi: 10.1101/2023.04.26.538471. bioRxiv. 2024. Update in: Nat Biotechnol. 2024 Oct 11. doi: 10.1038/s41587-024-02414-w PMID: 38405704 Free PMC article. Updated. Preprint.
LegNet: a best-in-class deep learning model for short DNA regulatory regions.
Penzar D, Nogina D, Noskova E, Zinkevich A, Meshcheryakov G, Lando A, Rafi AM, de Boer C, Kulakovskiy IV. Penzar D, et al. Among authors: meshcheryakov g. Bioinformatics. 2023 Aug 1;39(8):btad457. doi: 10.1093/bioinformatics/btad457. Bioinformatics. 2023. PMID: 37490428 Free PMC article.
Triangle Singularity as the Origin of the a_{1}(1420).
Alexeev GD, Alexeev MG, Amoroso A, Andrieux V, Anosov V, Antoshkin A, Augsten K, Augustyniak W, Azevedo CDR, Badełek B, Balestra F, Ball M, Barth J, Beck R, Bedfer Y, Berenguer Antequera J, Bernhard J, Bodlak M, Bradamante F, Bressan A, Burtsev VE, Chang WC, Chatterjee C, Chiosso M, Chumakov AG, Chung SU, Cicuttin A, Correia PMM, Crespo ML, D'Ago D, Dalla Torre S, Dasgupta SS, Dasgupta S, Denisenko I, Denisov OY, Donskov SV, Doshita N, Dreisbach C, Dünnweber W, Dusaev RR, Efremov A, Eversheim PD, Faccioli P, Faessler M, Finger M, Finger M, Fischer H, Franco C, Friedrich JM, Frolov V, Gautheron F, Gavrichtchouk OP, Gerassimov S, Giarra J, Gnesi I, Gorzellik M, Grasso A, Gridin A, Grosse Perdekamp M, Grube B, Guskov A, von Harrach D, Heitz R, Herrmann F, Horikawa N, d'Hose N, Hsieh CY, Huber S, Ishimoto S, Ivanov A, Iwata T, Jandek M, Jary V, Joosten R, Jörg P, Kabuß E, Kaspar F, Kerbizi A, Ketzer B, Khaustov GV, Khokhlov YA, Kisselev Y, Klein F, Koivuniemi JH, Kolosov VN, Kondo Horikawa K, Konorov I, Konstantinov VF, Kotzinian AM, Kouznetsov OM, Koval A, Kral Z, Krinner F, Kulinich Y, Kunne F, Kurek K, Kurjata RP, Kveton A, Lavickova K, Levorato S, Lian YS, Lichtenstadt J, Lin PJ, … See abstract for full author list ➔ Alexeev GD, et al. Among authors: meshcheryakov gv. Phys Rev Lett. 2021 Aug 20;127(8):082501. doi: 10.1103/PhysRevLett.127.082501. Phys Rev Lett. 2021. PMID: 34477443 Free article.
First Measurement of Transverse-Spin-Dependent Azimuthal Asymmetries in the Drell-Yan Process.
Aghasyan M, Akhunzyanov R, Alexeev GD, Alexeev MG, Amoroso A, Andrieux V, Anfimov NV, Anosov V, Antoshkin A, Augsten K, Augustyniak W, Austregesilo A, Azevedo CDR, Badełek B, Balestra F, Ball M, Barth J, Beck R, Bedfer Y, Bernhard J, Bicker K, Bielert ER, Birsa R, Bodlak M, Bordalo P, Bradamante F, Bressan A, Büchele M, Chang WC, Chatterjee C, Chiosso M, Choi I, Chung SU, Cicuttin A, Crespo ML, Dalla Torre S, Dasgupta SS, Dasgupta S, Denisov OY, Dhara L, Donskov SV, Doshita N, Dreisbach C, Dünnweber W, Dziewiecki M, Efremov A, Eversheim PD, Faessler M, Ferrero A, Finger M, Finger M, Fischer H, Franco C, du Fresne von Hohenesche N, Friedrich JM, Frolov V, Fuchey E, Gautheron F, Gavrichtchouk OP, Gerassimov S, Giarra J, Giordano F, Gnesi I, Gorzellik M, Grasso A, Grosse Perdekamp M, Grube B, Grussenmeyer T, Guskov A, Hahne D, Hamar G, von Harrach D, Heinsius FH, Heitz R, Herrmann F, Horikawa N, d'Hose N, Hsieh CY, Huber S, Ishimoto S, Ivanov A, Ivanshin Y, Iwata T, Jary V, Joosten R, Jörg P, Kabuß E, Kerbizi A, Ketzer B, Khaustov GV, Khokhlov YA, Kisselev Y, Klein F, Koivuniemi JH, Kolosov VN, Kondo K, Königsmann K, Konorov I, Konstantinov VF, Kotzinian AM, Kouznetsov OM, Kral Z, Kr… See abstract for full author list ➔ Aghasyan M, et al. Among authors: meshcheryakov gv. Phys Rev Lett. 2017 Sep 15;119(11):112002. doi: 10.1103/PhysRevLett.119.112002. Epub 2017 Sep 12. Phys Rev Lett. 2017. PMID: 28949229 Free article.
Observation of a New Narrow Axial-Vector Meson a1(1420).
Adolph C, Akhunzyanov R, Alexeev MG, Alexeev GD, Amoroso A, Andrieux V, Anosov V, Austregesilo A, Azevedo C, Badełek B, Balestra F, Barth J, Beck R, Bedfer Y, Bernhard J, Bicker K, Bielert ER, Birsa R, Bisplinghoff J, Bodlak M, Boer M, Bordalo P, Bradamante F, Braun C, Bressan A, Büchele M, Burtin E, Chang WC, Chiosso M, Choi I, Chung SU, Cicuttin A, Crespo ML, Curiel Q, Dalla Torre S, Dasgupta SS, Dasgupta S, Denisov OY, Dhara L, Donskov SV, Doshita N, Dünnweber W, Duic V, Dziewiecki M, Efremov A, Eversheim PD, Eyrich W, Faessler M, Ferrero A, Finger M, Finger M, Fischer H, Franco C, du Fresne von Hohenesche N, Friedrich JM, Frolov V, Gautheron F, Gavrichtchouk OP, Gerassimov S, Gnesi I, Gorzellik M, Grabmüller S, Grasso A, Grosse-Perdekamp M, Grube B, Grussenmeyer T, Guskov A, Haas F, Hahne D, von Harrach D, Hashimoto R, Heinsius FH, Herrmann F, Hinterberger F, Horikawa N, d'Hose N, Hsieh CY, Huber S, Ishimoto S, Ivanov A, Ivanshin Y, Iwata T, Jahn R, Jary V, Jörg P, Joosten R, Kabuß E, Ketzer B, Khaustov GV, Khokhlov YA, Kisselev Y, Klein F, Klimaszewski K, Koivuniemi JH, Kolosov VN, Kondo K, Königsmann K, Konorov I, Konstantinov VF, Kotzinian AM, Kouznetsov O, Krämer M, Kremse… See abstract for full author list ➔ Adolph C, et al. Among authors: meshcheryakov g. Phys Rev Lett. 2015 Aug 21;115(8):082001. doi: 10.1103/PhysRevLett.115.082001. Epub 2015 Aug 19. Phys Rev Lett. 2015. PMID: 26340182 Free article.
11 results