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A deconvolution framework that uses single-cell sequencing plus a small benchmark dataset for accurate analysis of cell type ratios in complex tissue samples.
Guo S, Liu X, Cheng X, Jiang Y, Ji S, Liang Q, Koval A, Li Y, Owen LA, Kim IK, Aparicio A, Lee S, Sood AK, Kopetz S, Shen JP, Weinstein JN, DeAngelis MM, Chen R, Wang W. Guo S, et al. Among authors: shen jp. Genome Res. 2024 Nov 25:gr.278822.123. doi: 10.1101/gr.278822.123. Online ahead of print. Genome Res. 2024. PMID: 39586714
scRNA-Seq Analysis Revealed CAFs Regulating HCC Cells via PTN Signaling.
Lin W, Tang L, Zhuo C, Mao X, Shen J, Huang S, Li S, Qin Y, Liao J, Chen Y, Zhang X, Li Y, Song J, Meng L, Dong X, Li Y. Lin W, et al. Among authors: shen j. J Hepatocell Carcinoma. 2024 Nov 18;11:2269-2281. doi: 10.2147/JHC.S493675. eCollection 2024. J Hepatocell Carcinoma. 2024. PMID: 39582814 Free PMC article.
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