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Page 1
Graph databases in systems biology: a systematic review.
Mazein I, Rougny A, Mazein A, Henkel R, Gütebier L, Michaelis L, Ostaszewski M, Schneider R, Satagopam V, Jensen LJ, Waltemath D, Wodke JAH, Balaur I. Mazein I, et al. Among authors: wodke jah. Brief Bioinform. 2024 Sep 23;25(6):bbae561. doi: 10.1093/bib/bbae561. Brief Bioinform. 2024. PMID: 39565895
MeDaX: A Knowledge Graph on FHIR.
Mazein I, Gebhardt T, Zinkewitz F, Michaelis L, Braun S, Waltemath D, Henkel R, Wodke JAH. Mazein I, et al. Among authors: wodke jah. Stud Health Technol Inform. 2024 Aug 22;316:367-371. doi: 10.3233/SHTI240423. Stud Health Technol Inform. 2024. PMID: 39176753
[Interoperability Working Group: core dataset and information systems for data integration and data exchange in the Medical Informatics Initiative].
Ammon D, Kurscheidt M, Buckow K, Kirsten T, Löbe M, Meineke F, Prasser F, Saß J, Sax U, Stäubert S, Thun S, Wettstein R, Wiedekopf JP, Wodke JAH, Boeker M, Ganslandt T. Ammon D, et al. Among authors: wodke jah. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2024 Jun;67(6):656-667. doi: 10.1007/s00103-024-03888-4. Epub 2024 May 16. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2024. PMID: 38753022 Free PMC article. German.
Democratizing knowledge representation with BioCypher.
Lobentanzer S, Aloy P, Baumbach J, Bohar B, Carey VJ, Charoentong P, Danhauser K, Doğan T, Dreo J, Dunham I, Farr E, Fernandez-Torras A, Gyori BM, Hartung M, Hoyt CT, Klein C, Korcsmaros T, Maier A, Mann M, Ochoa D, Pareja-Lorente E, Popp F, Preusse M, Probul N, Schwikowski B, Sen B, Strauss MT, Turei D, Ulusoy E, Waltemath D, Wodke JAH, Saez-Rodriguez J. Lobentanzer S, et al. Among authors: wodke jah. Nat Biotechnol. 2023 Aug;41(8):1056-1059. doi: 10.1038/s41587-023-01848-y. Nat Biotechnol. 2023. PMID: 37337100 No abstract available.
The MeDaX Knowledge Graph Prototype.
Wodke JAH, Michaelis L, Henkel R. Wodke JAH, et al. Stud Health Technol Inform. 2023 May 18;302:147-148. doi: 10.3233/SHTI230089. Stud Health Technol Inform. 2023. PMID: 37203634
Control of COVID-19 Outbreaks under Stochastic Community Dynamics, Bimodality, or Limited Vaccination.
Goldenbogen B, Adler SO, Bodeit O, Wodke JAH, Escalera-Fanjul X, Korman A, Krantz M, Bonn L, Morán-Torres R, Haffner JEL, Karnetzki M, Maintz I, Mallis L, Prawitz H, Segelitz PS, Seeger M, Linding R, Klipp E. Goldenbogen B, et al. Among authors: wodke jah. Adv Sci (Weinh). 2022 Aug;9(23):e2200088. doi: 10.1002/advs.202200088. Epub 2022 May 23. Adv Sci (Weinh). 2022. PMID: 35607290 Free PMC article.
Nonalcoholic fatty liver disease stratification by liver lipidomics.
Vvedenskaya O, Rose TD, Knittelfelder O, Palladini A, Wodke JAH, Schuhmann K, Ackerman JM, Wang Y, Has C, Brosch M, Thangapandi VR, Buch S, Züllig T, Hartler J, Köfeler HC, Röcken C, Coskun Ü, Klipp E, von Schoenfels W, Gross J, Schafmayer C, Hampe J, Pauling JK, Shevchenko A. Vvedenskaya O, et al. Among authors: wodke jah. J Lipid Res. 2021;62:100104. doi: 10.1016/j.jlr.2021.100104. Epub 2021 Aug 10. J Lipid Res. 2021. PMID: 34384788 Free PMC article.
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Sheriff RSM, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. Lieven C, et al. Among authors: wodke jah. Nat Biotechnol. 2020 Apr;38(4):504. doi: 10.1038/s41587-020-0477-4. Nat Biotechnol. 2020. PMID: 32265554 Free PMC article.
MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Malik Sheriff RS, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. Lieven C, et al. Among authors: wodke jah. Nat Biotechnol. 2020 Mar;38(3):272-276. doi: 10.1038/s41587-020-0446-y. Nat Biotechnol. 2020. PMID: 32123384 Free PMC article. No abstract available.
Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances.
Chen WH, van Noort V, Lluch-Senar M, Hennrich ML, Wodke JA, Yus E, Alibés A, Roma G, Mende DR, Pesavento C, Typas A, Gavin AC, Serrano L, Bork P. Chen WH, et al. Nucleic Acids Res. 2016 Feb 18;44(3):1192-202. doi: 10.1093/nar/gkw004. Epub 2016 Jan 14. Nucleic Acids Res. 2016. PMID: 26773059 Free PMC article.
15 results