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DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology.
Attafi OA, Clementel D, Kyritsis K, Capriotti E, Farrell G, Fragkouli SC, Castro LJ, Hatos A, Lenaerts T, Mazurenko S, Mozaffari S, Pradelli F, Ruch P, Savojardo C, Turina P, Zambelli F, Piovesan D, Monzon AM, Psomopoulos F, Tosatto SCE. Attafi OA, et al. Among authors: piovesan d. Gigascience. 2024 Jan 2;13:giae094. doi: 10.1093/gigascience/giae094. Gigascience. 2024. PMID: 39661723 Free PMC article.
InterPro: the protein sequence classification resource in 2025.
Blum M, Andreeva A, Florentino LC, Chuguransky SR, Grego T, Hobbs E, Pinto BL, Orr A, Paysan-Lafosse T, Ponamareva I, Salazar GA, Bordin N, Bork P, Bridge A, Colwell L, Gough J, Haft DH, Letunic I, Llinares-López F, Marchler-Bauer A, Meng-Papaxanthos L, Mi H, Natale DA, Orengo CA, Pandurangan AP, Piovesan D, Rivoire C, Sigrist CJA, Thanki N, Thibaud-Nissen F, Thomas PD, Tosatto SCE, Wu CH, Bateman A. Blum M, et al. Among authors: piovesan d. Nucleic Acids Res. 2024 Nov 20:gkae1082. doi: 10.1093/nar/gkae1082. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39565202
STRPsearch: fast detection of structured tandem repeat proteins.
Mozaffari S, Arrías PN, Clementel D, Piovesan D, Ferrari C, Tosatto SCE, Monzon AM. Mozaffari S, et al. Among authors: piovesan d. Bioinformatics. 2024 Nov 28;40(12):btae690. doi: 10.1093/bioinformatics/btae690. Bioinformatics. 2024. PMID: 39558588 Free PMC article.
CAFA-evaluator: a Python tool for benchmarking ontological classification methods.
Piovesan D, Zago D, Joshi P, De Paolis Kaluza MC, Mehdiabadi M, Ramola R, Monzon AM, Reade W, Friedberg I, Radivojac P, Tosatto SCE. Piovesan D, et al. Bioinform Adv. 2024 Mar 14;4(1):vbae043. doi: 10.1093/bioadv/vbae043. eCollection 2024. Bioinform Adv. 2024. PMID: 38545087 Free PMC article.
145 results