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Page 1
InterPro: the protein sequence classification resource in 2025.
Blum M, Andreeva A, Florentino LC, Chuguransky SR, Grego T, Hobbs E, Pinto BL, Orr A, Paysan-Lafosse T, Ponamareva I, Salazar GA, Bordin N, Bork P, Bridge A, Colwell L, Gough J, Haft DH, Letunic I, Llinares-López F, Marchler-Bauer A, Meng-Papaxanthos L, Mi H, Natale DA, Orengo CA, Pandurangan AP, Piovesan D, Rivoire C, Sigrist CJA, Thanki N, Thibaud-Nissen F, Thomas PD, Tosatto SCE, Wu CH, Bateman A. Blum M, et al. Among authors: bork p. Nucleic Acids Res. 2024 Nov 20:gkae1082. doi: 10.1093/nar/gkae1082. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39565202
The STRING database in 2025: protein networks with directionality of regulation.
Szklarczyk D, Nastou K, Koutrouli M, Kirsch R, Mehryary F, Hachilif R, Hu D, Peluso ME, Huang Q, Fang T, Doncheva NT, Pyysalo S, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: bork p. Nucleic Acids Res. 2024 Nov 18:gkae1113. doi: 10.1093/nar/gkae1113. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39558183
Fecal microbial load is a major determinant of gut microbiome variation and a confounder for disease associations.
Nishijima S, Stankevic E, Aasmets O, Schmidt TSB, Nagata N, Keller MI, Ferretti P, Juel HB, Fullam A, Robbani SM, Schudoma C, Hansen JK, Holm LA, Israelsen M, Schierwagen R, Torp N, Telzerow A, Hercog R, Kandels S, Hazenbrink DHM, Arumugam M, Bendtsen F, Brøns C, Fonvig CE, Holm JC, Nielsen T, Pedersen JS, Thiele MS, Trebicka J, Org E, Krag A, Hansen T, Kuhn M, Bork P; GALAXY and MicrobLiver Consortia. Nishijima S, et al. Among authors: bork p. Cell. 2024 Nov 4:S0092-8674(24)01204-2. doi: 10.1016/j.cell.2024.10.022. Online ahead of print. Cell. 2024. PMID: 39541968 Free article.
Examining the healthy human microbiome concept.
Joos R, Boucher K, Lavelle A, Arumugam M, Blaser MJ, Claesson MJ, Clarke G, Cotter PD, De Sordi L, Dominguez-Bello MG, Dutilh BE, Ehrlich SD, Ghosh TS, Hill C, Junot C, Lahti L, Lawley TD, Licht TR, Maguin E, Makhalanyane TP, Marchesi JR, Matthijnssens J, Raes J, Ravel J, Salonen A, Scanlan PD, Shkoporov A, Stanton C, Thiele I, Tolstoy I, Walter J, Yang B, Yutin N, Zhernakova A, Zwart H; Human Microbiome Action Consortium; Doré J, Ross RP. Joos R, et al. Nat Rev Microbiol. 2024 Oct 23. doi: 10.1038/s41579-024-01107-0. Online ahead of print. Nat Rev Microbiol. 2024. PMID: 39443812 Review.
Emergence of community behaviors in the gut microbiota upon drug treatment.
Garcia-Santamarina S, Kuhn M, Devendran S, Maier L, Driessen M, Mateus A, Mastrorilli E, Brochado AR, Savitski MM, Patil KR, Zimmermann M, Bork P, Typas A. Garcia-Santamarina S, et al. Among authors: bork p. Cell. 2024 Oct 31;187(22):6346-6357.e20. doi: 10.1016/j.cell.2024.08.037. Epub 2024 Sep 24. Cell. 2024. PMID: 39321801 Free article.
State of the art and the future of microbiome-based biomarkers: a multidisciplinary Delphi consensus.
Rodriguez J, Hassani Z, Alves Costa Silva C, Betsou F, Carraturo F, Fasano A, Israelsen M, Iyappan A, Krag A, Metwaly A, Schierwagen R, Trebicka J, Zwart H, Doré J, Cordaillat-Simmons M, Druart C; Human Microbiome Action consortium. Rodriguez J, et al. Lancet Microbe. 2024 Sep 4:100948. doi: 10.1016/j.lanmic.2024.07.011. Online ahead of print. Lancet Microbe. 2024. PMID: 39243797 Free article. Review.
A catalog of small proteins from the global microbiome.
Duan Y, Santos-Júnior CD, Schmidt TS, Fullam A, de Almeida BLS, Zhu C, Kuhn M, Zhao XM, Bork P, Coelho LP. Duan Y, et al. Among authors: bork p. Nat Commun. 2024 Aug 31;15(1):7563. doi: 10.1038/s41467-024-51894-6. Nat Commun. 2024. PMID: 39214983 Free PMC article.
Bifidobacterium and Lactobacillus Probiotics and Gut Dysbiosis in Preterm Infants: The PRIMAL Randomized Clinical Trial.
Van Rossum T, Haiß A, Knoll RL, Marißen J, Podlesny D, Pagel J, Bleskina M, Vens M, Fortmann I, Siller B, Ricklefs I, Klopp J, Hilbert K, Meyer C, Thielemann R, Goedicke-Fritz S, Kuntz M, Wieg C, Teig N, Körner T, Kribs A, Hudalla H, Knuf M, Stein A, Gille C, Bagci S, Dohle F, Proquitté H, Olbertz DM, Schmidt E, Koch L, Pirr S, Rupp J, Spiegler J, Kopp MV, Göpel W, Herting E, Forslund SK, Viemann D, Zemlin M, Bork P, Gehring S, König IR, Henneke P, Härtel C. Van Rossum T, et al. Among authors: bork p. JAMA Pediatr. 2024 Oct 1;178(10):985-995. doi: 10.1001/jamapediatrics.2024.2626. JAMA Pediatr. 2024. PMID: 39102225 Clinical Trial.
700 results