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Page 1
Examining the healthy human microbiome concept.
Joos R, Boucher K, Lavelle A, Arumugam M, Blaser MJ, Claesson MJ, Clarke G, Cotter PD, De Sordi L, Dominguez-Bello MG, Dutilh BE, Ehrlich SD, Ghosh TS, Hill C, Junot C, Lahti L, Lawley TD, Licht TR, Maguin E, Makhalanyane TP, Marchesi JR, Matthijnssens J, Raes J, Ravel J, Salonen A, Scanlan PD, Shkoporov A, Stanton C, Thiele I, Tolstoy I, Walter J, Yang B, Yutin N, Zhernakova A, Zwart H; Human Microbiome Action Consortium; Doré J, Ross RP. Joos R, et al. Among authors: thiele i. Nat Rev Microbiol. 2024 Oct 23. doi: 10.1038/s41579-024-01107-0. Online ahead of print. Nat Rev Microbiol. 2024. PMID: 39443812 Review.
A toolbox of machine learning software to support microbiome analysis.
Marcos-Zambrano LJ, López-Molina VM, Bakir-Gungor B, Frohme M, Karaduzovic-Hadziabdic K, Klammsteiner T, Ibrahimi E, Lahti L, Loncar-Turukalo T, Dhamo X, Simeon A, Nechyporenko A, Pio G, Przymus P, Sampri A, Trajkovik V, Lacruz-Pleguezuelos B, Aasmets O, Araujo R, Anagnostopoulos I, Aydemir Ö, Berland M, Calle ML, Ceci M, Duman H, Gündoğdu A, Havulinna AS, Kaka Bra KHN, Kalluci E, Karav S, Lode D, Lopes MB, May P, Nap B, Nedyalkova M, Paciência I, Pasic L, Pujolassos M, Shigdel R, Susín A, Thiele I, Truică CO, Wilmes P, Yilmaz E, Yousef M, Claesson MJ, Truu J, Carrillo de Santa Pau E. Marcos-Zambrano LJ, et al. Among authors: thiele i. Front Microbiol. 2023 Nov 22;14:1250806. doi: 10.3389/fmicb.2023.1250806. eCollection 2023. Front Microbiol. 2023. PMID: 38075858 Free PMC article. Review.
Genomic and functional characterization of the Atlantic salmon gut microbiome in relation to nutrition and health.
Vera-Ponce de León A, Hensen T, Hoetzinger M, Gupta S, Weston B, Johnsen SM, Rasmussen JA, Clausen CG, Pless L, Veríssimo ARA, Rudi K, Snipen L, Karlsen CR, Limborg MT, Bertilsson S, Thiele I, Hvidsten TR, Sandve SR, Pope PB, La Rosa SL. Vera-Ponce de León A, et al. Among authors: thiele i. Nat Microbiol. 2024 Nov;9(11):3059-3074. doi: 10.1038/s41564-024-01830-7. Epub 2024 Oct 14. Nat Microbiol. 2024. PMID: 39402236
Author Correction: The gut microbial metabolite formate exacerbates colorectal cancer progression.
Ternes D, Tsenkova M, Pozdeev VI, Meyers M, Koncina E, Atatri S, Schmitz M, Karta J, Schmoetten M, Heinken A, Rodriguez F, Delbrouck C, Gaigneaux A, Ginolhac A, Nguyen TTD, Grandmougin L, Frachet-Bour A, Martin-Gallausiaux C, Pacheco M, Neuberger-Castillo L, Miranda P, Zuegel N, Ferrand JY, Gantenbein M, Sauter T, Slade DJ, Thiele I, Meiser J, Haan S, Wilmes P, Letellier E. Ternes D, et al. Among authors: thiele i. Nat Metab. 2023 Sep;5(9):1638. doi: 10.1038/s42255-023-00898-5. Nat Metab. 2023. PMID: 37709964 Free PMC article. No abstract available.
APOLLO: A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites.
Heinken A, Hulshof TO, Nap B, Martinelli F, Basile A, O'Brolchain A, O'Sullivan NF, Gallagher C, Magee E, McDonagh F, Lalor I, Bergin M, Evans P, Daly R, Farrell R, Delaney RM, Hill S, McAuliffe SR, Kilgannon T, Fleming RMT, Thinnes CC, Thiele I. Heinken A, et al. Among authors: thiele i. bioRxiv [Preprint]. 2023 Oct 3:2023.10.02.560573. doi: 10.1101/2023.10.02.560573. bioRxiv. 2023. PMID: 37873072 Free PMC article. Preprint.
185 results