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irCLIP-RNP and Re-CLIP reveal patterns of dynamic protein associations on RNA.
Ducoli L, Zarnegar BJ, Porter DF, Meyers RM, Miao W, Riley NM, Srinivasan S, Jackrazi LV, Yang YY, Li Z, Wang Y, Bertozzi CR, Flynn RA, Khavari PA. Ducoli L, et al. Among authors: miao w. bioRxiv [Preprint]. 2024 Sep 28:2024.09.27.615518. doi: 10.1101/2024.09.27.615518. bioRxiv. 2024. PMID: 39386644 Free PMC article. Preprint.
The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation.
Meyers JM, Ramanathan M, Shanderson RL, Donohue L, Ferguson I, Guo MG, Rao DS, Miao W, Reynolds D, Yang X, Zhao Y, Yang YY, Wang Y, Khavari PA. Meyers JM, et al. Among authors: miao w. bioRxiv [Preprint]. 2021 Feb 23:2021.02.23.432450. doi: 10.1101/2021.02.23.432450. bioRxiv. 2021. Update in: PLoS Pathog. 2021 Oct 1;17(10):e1009412. doi: 10.1371/journal.ppat.1009412. PMID: 33655243 Free PMC article. Updated. Preprint.
Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation.
Miao W, Porter DF, Lopez-Pajares V, Siprashvili Z, Meyers RM, Bai Y, Nguyen DT, Ko LA, Zarnegar BJ, Ferguson ID, Mills MM, Jilly-Rehak CE, Wu CG, Yang YY, Meyers JM, Hong AW, Reynolds DL, Ramanathan M, Tao S, Jiang S, Flynn RA, Wang Y, Nolan GP, Khavari PA. Miao W, et al. Cell. 2023 Jan 5;186(1):80-97.e26. doi: 10.1016/j.cell.2022.12.004. Cell. 2023. PMID: 36608661 Free PMC article.
PROBER identifies proteins associated with programmable sequence-specific DNA in living cells.
Mondal S, Ramanathan M, Miao W, Meyers RM, Rao D, Lopez-Pajares V, Siprashvili Z, Reynolds DL, Porter DF, Ferguson I, Neela P, Zhao Y, Meservey LM, Guo M, Yang YY, Li L, Wang Y, Khavari PA. Mondal S, et al. Among authors: miao w. Nat Methods. 2022 Aug;19(8):959-968. doi: 10.1038/s41592-022-01552-w. Epub 2022 Aug 4. Nat Methods. 2022. PMID: 35927480 Free PMC article.
1,188 results