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Aerobic adaptation and metabolic dynamics of Propionibacterium freudenreichii DSM 20271: insights from comparative transcriptomics and surfaceome analysis.
Loivamaa I, Sillanpää A, Deptula P, Chamlagain B, Edelmann M, Auvinen P, Nyman TA, Savijoki K, Piironen V, Varmanen P. Loivamaa I, et al. Among authors: nyman ta. mSystems. 2024 Oct 22;9(10):e0061524. doi: 10.1128/msystems.00615-24. Epub 2024 Sep 30. mSystems. 2024. PMID: 39345151 Free PMC article.
Proteomics and transcriptomics characterization of bile stress response in probiotic Lactobacillus rhamnosus GG.
Koskenniemi K, Laakso K, Koponen J, Kankainen M, Greco D, Auvinen P, Savijoki K, Nyman TA, Surakka A, Salusjärvi T, de Vos WM, Tynkkynen S, Kalkkinen N, Varmanen P. Koskenniemi K, et al. Among authors: nyman ta. Mol Cell Proteomics. 2011 Feb;10(2):M110.002741. doi: 10.1074/mcp.M110.002741. Epub 2010 Nov 15. Mol Cell Proteomics. 2011. PMID: 21078892 Free PMC article.
Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium.
Laakso K, Koskenniemi K, Koponen J, Kankainen M, Surakka A, Salusjärvi T, Auvinen P, Savijoki K, Nyman TA, Kalkkinen N, Tynkkynen S, Varmanen P. Laakso K, et al. Among authors: nyman ta. Microb Biotechnol. 2011 Nov;4(6):746-66. doi: 10.1111/j.1751-7915.2011.00275.x. Epub 2011 Sep 1. Microb Biotechnol. 2011. PMID: 21883975 Free PMC article.
Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins.
Siljamäki P, Varmanen P, Kankainen M, Pyörälä S, Karonen T, Iivanainen A, Auvinen P, Paulin L, Laine PK, Taponen S, Simojoki H, Sukura A, Nyman TA, Savijoki K. Siljamäki P, et al. Among authors: nyman ta. Proteomics. 2014 Aug;14(16):1890-4. doi: 10.1002/pmic.201300275. Epub 2014 Jul 10. Proteomics. 2014. PMID: 24909406
163 results