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Aerobic adaptation and metabolic dynamics of Propionibacterium freudenreichii DSM 20271: insights from comparative transcriptomics and surfaceome analysis.
Loivamaa I, Sillanpää A, Deptula P, Chamlagain B, Edelmann M, Auvinen P, Nyman TA, Savijoki K, Piironen V, Varmanen P. Loivamaa I, et al. Among authors: auvinen p. mSystems. 2024 Oct 22;9(10):e0061524. doi: 10.1128/msystems.00615-24. Epub 2024 Sep 30. mSystems. 2024. PMID: 39345151 Free PMC article.
Complete genome sequence of Propionibacterium freudenreichii DSM 20271(T).
Koskinen P, Deptula P, Smolander OP, Tamene F, Kammonen J, Savijoki K, Paulin L, Piironen V, Auvinen P, Varmanen P. Koskinen P, et al. Among authors: auvinen p. Stand Genomic Sci. 2015 Oct 24;10:83. doi: 10.1186/s40793-015-0082-1. eCollection 2015. Stand Genomic Sci. 2015. PMID: 26500719 Free PMC article.
Proteomics and transcriptomics characterization of bile stress response in probiotic Lactobacillus rhamnosus GG.
Koskenniemi K, Laakso K, Koponen J, Kankainen M, Greco D, Auvinen P, Savijoki K, Nyman TA, Surakka A, Salusjärvi T, de Vos WM, Tynkkynen S, Kalkkinen N, Varmanen P. Koskenniemi K, et al. Among authors: auvinen p. Mol Cell Proteomics. 2011 Feb;10(2):M110.002741. doi: 10.1074/mcp.M110.002741. Epub 2010 Nov 15. Mol Cell Proteomics. 2011. PMID: 21078892 Free PMC article.
Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins.
Siljamäki P, Varmanen P, Kankainen M, Pyörälä S, Karonen T, Iivanainen A, Auvinen P, Paulin L, Laine PK, Taponen S, Simojoki H, Sukura A, Nyman TA, Savijoki K. Siljamäki P, et al. Among authors: auvinen p. Proteomics. 2014 Aug;14(16):1890-4. doi: 10.1002/pmic.201300275. Epub 2014 Jul 10. Proteomics. 2014. PMID: 24909406
Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium.
Laakso K, Koskenniemi K, Koponen J, Kankainen M, Surakka A, Salusjärvi T, Auvinen P, Savijoki K, Nyman TA, Kalkkinen N, Tynkkynen S, Varmanen P. Laakso K, et al. Among authors: auvinen p. Microb Biotechnol. 2011 Nov;4(6):746-66. doi: 10.1111/j.1751-7915.2011.00275.x. Epub 2011 Sep 1. Microb Biotechnol. 2011. PMID: 21883975 Free PMC article.
Acidipropionibacterium virtanenii sp. nov., isolated from malted barley.
Deptula P, Smolander OP, Laine P, Roberts RJ, Edelmann M, Peltola P, Piironen V, Paulin L, Storgårds E, Savijoki K, Laitila A, Auvinen P, Varmanen P. Deptula P, et al. Among authors: auvinen p. Int J Syst Evol Microbiol. 2018 Oct;68(10):3175-3183. doi: 10.1099/ijsem.0.002965. Epub 2018 Aug 29. Int J Syst Evol Microbiol. 2018. PMID: 30156530
363 results