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High-quality peptide evidence for annotating non-canonical open reading frames as human proteins.
Deutsch EW, Kok LW, Mudge JM, Ruiz-Orera J, Fierro-Monti I, Sun Z, Abelin JG, Alba MM, Aspden JL, Bazzini AA, Bruford EA, Brunet MA, Calviello L, Carr SA, Carvunis AR, Chothani S, Clauwaert J, Dean K, Faridi P, Frankish A, Hubner N, Ingolia NT, Magrane M, Martin MJ, Martinez TF, Menschaert G, Ohler U, Orchard S, Rackham O, Roucou X, Slavoff SA, Valen E, Wacholder A, Weissman JS, Wu W, Xie Z, Choudhary J, Bassani-Sternberg M, Vizcaíno JA, Ternette N, Moritz RL, Prensner JR, van Heesch S. Deutsch EW, et al. Among authors: orchard s. bioRxiv [Preprint]. 2024 Sep 9:2024.09.09.612016. doi: 10.1101/2024.09.09.612016. bioRxiv. 2024. PMID: 39314370 Free PMC article. Preprint.
Searching and Navigating UniProt Databases.
Lussi YC, Magrane M, Martin MJ, Orchard S; UniProt Consortium. Lussi YC, et al. Among authors: orchard s. Curr Protoc. 2023 Mar;3(3):e700. doi: 10.1002/cpz1.700. Curr Protoc. 2023. PMID: 36912607
The 2024 Report on the Human Proteome from the HUPO Human Proteome Project.
Omenn GS, Orchard S, Lane L, Lindskog C, Pineau C, Overall CM, Budnik B, Mudge JM, Packer NH, Weintraub ST, Roehrl MHA, Nice E, Guo T, Van Eyk JE, Völker U, Zhang G, Bandeira N, Aebersold R, Moritz RL, Deutsch EW. Omenn GS, et al. Among authors: orchard s. J Proteome Res. 2024 Dec 6;23(12):5296-5311. doi: 10.1021/acs.jproteome.4c00776. Epub 2024 Nov 8. J Proteome Res. 2024. PMID: 39514846 Free PMC article. Review.
Controlled vocabularies and ontologies in proteomics: overview, principles and practice.
Mayer G, Jones AR, Binz PA, Deutsch EW, Orchard S, Montecchi-Palazzi L, Vizcaíno JA, Hermjakob H, Oveillero D, Julian R, Stephan C, Meyer HE, Eisenacher M. Mayer G, et al. Among authors: orchard s. Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):98-107. doi: 10.1016/j.bbapap.2013.02.017. Epub 2013 Feb 19. Biochim Biophys Acta. 2014. PMID: 23429179 Free PMC article. Review.
301 results