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Page 1
A new lineage nomenclature to aid genomic surveillance of dengue virus.
Hill V, Cleemput S, Pereira JS, Gifford RJ, Fonseca V, Tegally H, Brito AF, Ribeiro G, de Souza VC, Brcko IC, Ribeiro IS, De Lima ITT, Slavov SN, Sampaio SC, Elias MC, Tran VT, Kien DTH, Huynh T, Yacoub S, Dieng I, Salvato R, Wallau GL, Gregianini TS, Godinho FMS, Vogels CBF, Breban MI, Leguia M, Jagtap S, Roy R, Hapuarachchi C, Mwanyika G, Giovanetti M, Alcantara LCJ, Faria NR, Carrington CVF, Hanley KA, Holmes EC, Dumon W, Lima ARJ, Oliveira T, Grubaugh ND. Hill V, et al. Among authors: holmes ec. PLoS Biol. 2024 Sep 16;22(9):e3002834. doi: 10.1371/journal.pbio.3002834. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39283942 Free PMC article.
A new lineage nomenclature to aid genomic surveillance of dengue virus.
Hill V, Cleemput S, Fonseca V, Tegally H, Brito AF, Gifford R, Tran VT, Kien DTH, Huynh T, Yacoub S, Dieng I, Ndiaye M, Balde D, Diagne MM, Faye O, Salvato R, Wallau GL, Gregianini TS, Godinho FMS, Vogels CBF, Breban MI, Leguia M, Jagtap S, Roy R, Hapuarachchi C, Mwanyika G, Giovanetti M, Alcantara LCJ, Faria NR, Carrington CVF, Hanley KA, Holmes EC, Dumon W, de Oliveira T, Grubaugh ND. Hill V, et al. Among authors: holmes ec. medRxiv [Preprint]. 2024 May 17:2024.05.16.24307504. doi: 10.1101/2024.05.16.24307504. medRxiv. 2024. Update in: PLoS Biol. 2024 Sep 16;22(9):e3002834. doi: 10.1371/journal.pbio.3002834. PMID: 38798319 Free PMC article. Updated. Preprint.
Genomic epidemiology reveals the impact of national and international restrictions measures on the SARS-CoV-2 epidemic in Brazil.
Giovanetti M, Slavov SN, Fonseca V, Wilkinson E, Tegally H, Patané JSL, Viala VL, San JE, Rodrigues ES, Santos EV, Aburjaile F, Xavier J, Fritsch H, Adelino TER, Pereira F, Leal A, de Melo Iani FC, de Carvalho Pereira G, Vazquez C, Mercedes Estigarribia Sanabria G, de Oliveira EC, Demarchi L, Croda J, Dos Santos Bezerra R, de Lima LPO, Martins AJ, Dos Santos Barros CR, Marqueze EC, de Souza Todao Bernardino J, Moretti DB, Brassaloti RA, de Lello Rocha Campos Cassano R, Mariani PDSC, Kitajima JP, Santos B, Proto-Siqueira R, Cantarelli VV, Tosta S, Nardy VB, de Oliveira da Silva LR, Kelly Astete Gómez M, Lima JG, Ribeiro AA, Guimarães NR, Watanabe LT, Da Silva LB, da Silva Ferreira R, da Penha MPF, Ortega MJ, de la Fuente AG, Villalba S, Torales J, Gamarra ML, Aquino C, Martínez Figueredo GP, Fava WS, Motta-Castro ARC, Venturini J, de Oliveira SMDVL, Gonçalves CCM, do Carmo Debur Rossa M, Becker GN, Presibella MM, Marques NQ, Riediger IN, Raboni S, Coelho GM, Cataneo AHD, Zanluca C, Dos Santos CND, Assato PA, da Costa FADS, Poleti MD, Lesbon JCC, Mattos EC, Banho CA, Sacchetto L, Moraes MM, Grotto RMT, Souza-Neto JA, Nogueira ML, Fukumasu H, Coutinho LL, Calado RT, Neto RM, de Filip… See abstract for full author list ➔ Giovanetti M, et al. Among authors: holmes ec. medRxiv [Preprint]. 2022 Mar 28:2021.10.07.21264644. doi: 10.1101/2021.10.07.21264644. medRxiv. 2022. Update in: Nat Microbiol. 2022 Sep;7(9):1490-1500. doi: 10.1038/s41564-022-01191-z. PMID: 35378755 Free PMC article. Updated. Preprint.
Rapid epidemic expansion of chikungunya virus-ECSA lineage in Paraguay.
Giovanetti M, Vazquez C, Lima M, Castro E, Rojas A, de la Fuente AG, Aquino C, Cantero C, Fleitas F, Torales J, Barrios J, Ortega MJ, Gamarra ML, Villalba S, Alfonzo T, Xavier J, Adelino T, Fritsch H, Iani FCM, Pereira GC, de Oliveira C, Schuab G, Rodrigues ES, Kashima S, Leite J, Gresh L, Franco L, Tegally H, Van Voorhis WC, Lessels R, de Filippis AMB, Ojeda A, Sequera G, Montoya R, Holmes EC, de Oliveira T, Rico JM, Lourenço J, Fonseca V, Alcantara LCJ. Giovanetti M, et al. Among authors: holmes ec. medRxiv [Preprint]. 2023 Apr 17:2023.04.16.23288635. doi: 10.1101/2023.04.16.23288635. medRxiv. 2023. Update in: Emerg Infect Dis. 2023 Sep;29(9):1859-1863. doi: 10.3201/eid2909.230523. PMID: 37131602 Free PMC article. Updated. Preprint.
Rapid Epidemic Expansion of Chikungunya Virus East/Central/South African Lineage, Paraguay.
Giovanetti M, Vazquez C, Lima M, Castro E, Rojas A, Gomez de la Fuente A, Aquino C, Cantero C, Fleitas F, Torales J, Barrios J, Ortega MJ, Gamarra ML, Villalba S, Alfonzo T, Xavier J, Adelino T, Fritsch H, Iani FCM, Pereira GC, de Oliveira C, Schuab G, Rodrigues ES, Kashima S, Leite J, Gresh L, Franco L, Tegally H, Van Voorhis WC, Lessels R, de Filippis AMB, Ojeda A, Sequera G, Montoya R, Holmes EC, de Oliveira T, Rico JM, Lourenço J, Fonseca V, Alcantara LCJ. Giovanetti M, et al. Among authors: holmes ec. Emerg Infect Dis. 2023 Sep;29(9):1859-1863. doi: 10.3201/eid2909.230523. Epub 2023 Jul 25. Emerg Infect Dis. 2023. PMID: 37488810 Free PMC article.
Epidemiologic History and Genetic Diversity Origins of Chikungunya and Dengue Viruses, Paraguay.
Gräf T, Vazquez C, Giovanetti M, de Bruycker-Nogueira F, Fonseca V, Claro IM, de Jesus JG, Gómez A, Xavier J, de Mendonça MCL, Villalba S, Torales J, Gamarra ML, Thézé J, de Filippis AMB, Azevedo V, de Oliveira T, Franco L, de Albuquerque CFC, Irala S, Holmes EC, Méndez Rico JA, Alcantara LCJ. Gräf T, et al. Among authors: holmes ec. Emerg Infect Dis. 2021 May;27(5):1393-1404. doi: 10.3201/eid2705.204244. Emerg Infect Dis. 2021. PMID: 33900172 Free PMC article.
Dynamics and ecology of a multi-stage expansion of Oropouche virus in Brazil.
Tegally H, Dellicour S, Poongavanan J, Mavian C, Dor G, Fonseca V, Tagliamonte MS, Dunaiski M, Moir M, Wilkinson E, de Albuquerque CFC, Frutuoso LCV; CLIMADE Consortium; Holmes EC, Baxter C, Lessells R, Kraemer MUG, Lourenço J, Alcantara LCJ, de Oliveira T, Giovanetti M. Tegally H, et al. Among authors: holmes ec. medRxiv [Preprint]. 2024 Oct 30:2024.10.29.24316328. doi: 10.1101/2024.10.29.24316328. medRxiv. 2024. PMID: 39574858 Free PMC article. Preprint.
Contrasting dynamics of two incursions of low-pathogenicity avian influenza virus into Australia.
Wille M, Broz I, Cherrington T, Crawley A, Farrugia B, Ford M, Frost M, Grimsey J, Kirkland PD, Latimore S, Lynch SE, Martin S, Matereke C, Mee PT, Neave MJ, O'Dea M, Read AJ, O'Riley K, Stevens V, Thayaparan S, Zufan S, Ban de Gouvea Pedroso S, Grillo V, Breed AC, Barr IG, Holmes EC, Klaassen M, Wong FYK. Wille M, et al. Among authors: holmes ec. Virus Evol. 2024 Sep 10;10(1):veae076. doi: 10.1093/ve/veae076. eCollection 2024. Virus Evol. 2024. PMID: 39416286 Free PMC article.
Using artificial intelligence to document the hidden RNA virosphere.
Hou X, He Y, Fang P, Mei SQ, Xu Z, Wu WC, Tian JH, Zhang S, Zeng ZY, Gou QY, Xin GY, Le SJ, Xia YY, Zhou YL, Hui FM, Pan YF, Eden JS, Yang ZH, Han C, Shu YL, Guo D, Li J, Holmes EC, Li ZR, Shi M. Hou X, et al. Among authors: holmes ec. Cell. 2024 Oct 3:S0092-8674(24)01085-7. doi: 10.1016/j.cell.2024.09.027. Online ahead of print. Cell. 2024. PMID: 39389057 Free article.
964 results