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Page 1
Comparative Analysis of Neural Crest Development in the Chick and Mouse.
Morrison JA, Pushel I, McLennan R, McKinney MC, Gogol MM, Scott A, Krumlauf R, Kulesa PM. Morrison JA, et al. Among authors: pushel i. bioRxiv [Preprint]. 2024 Nov 6:2024.11.06.622355. doi: 10.1101/2024.11.06.622355. bioRxiv. 2024. PMID: 39574664 Free PMC article. Preprint.
DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies.
Park J, Cook DE, Chang PC, Kolesnikov A, Brambrink L, Mier JC, Gardner J, McNulty B, Sacco S, Keskus A, Bryant A, Ahmad T, Shetty J, Zhao Y, Tran B, Narzisi G, Helland A, Yoo B, Pushel I, Lansdon LA, Bi C, Walter A, Gibson M, Pastinen T, Farooqi MS, Robine N, Miga KH, Carroll A, Kolmogorov M, Paten B, Shafin K. Park J, et al. Among authors: pushel i. bioRxiv [Preprint]. 2024 Aug 19:2024.08.16.608331. doi: 10.1101/2024.08.16.608331. bioRxiv. 2024. PMID: 39229187 Free PMC article. Preprint.
Evaluation of Hi-C sequencing for the detection of gene fusions in hematologic and solid pediatric cancer samples.
Schmitt AD, Sikkink K, Ahmed AA, Melnyk S, Reid D, Van Meter L, Guest EM, Lansdon LA, Pastinen T, Pushel I, Yoo B, Farooqi MS. Schmitt AD, et al. Among authors: pushel i. medRxiv [Preprint]. 2024 May 12:2024.05.10.24306838. doi: 10.1101/2024.05.10.24306838. medRxiv. 2024. Update in: Cancers (Basel). 2024 Aug 23;16(17):2936. doi: 10.3390/cancers16172936. PMID: 38765974 Free PMC article. Updated. Preprint.
Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads.
Keskus A, Bryant A, Ahmad T, Yoo B, Aganezov S, Goretsky A, Donmez A, Lansdon LA, Rodriguez I, Park J, Liu Y, Cui X, Gardner J, McNulty B, Sacco S, Shetty J, Zhao Y, Tran B, Narzisi G, Helland A, Cook DE, Chang PC, Kolesnikov A, Carroll A, Molloy EK, Pushel I, Guest E, Pastinen T, Shafin K, Miga KH, Malikic S, Day CP, Robine N, Sahinalp C, Dean M, Farooqi MS, Paten B, Kolmogorov M. Keskus A, et al. Among authors: pushel i. medRxiv [Preprint]. 2024 Mar 26:2024.03.22.24304756. doi: 10.1101/2024.03.22.24304756. medRxiv. 2024. PMID: 38585974 Free PMC article. Preprint.
Predicting neuroblastoma using developmental signals and a logic-based model.
Kasemeier-Kulesa JC, Schnell S, Woolley T, Spengler JA, Morrison JA, McKinney MC, Pushel I, Wolfe LA, Kulesa PM. Kasemeier-Kulesa JC, et al. Among authors: pushel i. Biophys Chem. 2018 Jul;238:30-38. doi: 10.1016/j.bpc.2018.04.004. Epub 2018 Apr 30. Biophys Chem. 2018. PMID: 29734136 Free PMC article.
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