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Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data.
Roder AE, Johnson KEE, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Chung M, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lässig M, Luksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23. Epub 2023 Jun 30. mBio. 2023. PMID: 37389439 Free PMC article.
Year-long COVID-19 infection reveals within-host evolution of SARS-CoV-2 in a patient with B cell depletion.
Nussenblatt V, Roder AE, Das S, de Wit E, Youn JH, Banakis S, Mushegian A, Mederos C, Wang W, Chung M, Pérez-Pérez L, Palmore T, Brudno JN, Kochenderfer JN, Ghedin E. Nussenblatt V, et al. Among authors: roder ae. medRxiv [Preprint]. 2021 Oct 5:2021.10.02.21264267. doi: 10.1101/2021.10.02.21264267. medRxiv. 2021. Update in: J Infect Dis. 2022 Apr 1;225(7):1118-1123. doi: 10.1093/infdis/jiab622. PMID: 34642697 Free PMC article. Updated. Preprint.
Detection of SARS-CoV2 variants by Mesa Accula.
Totten AH, Youn JH, Roder A, Ghedin E, Palmore TN, Frank KM, Das S, Zelazny AM. Totten AH, et al. J Clin Virol. 2021 Aug;141:104901. doi: 10.1016/j.jcv.2021.104901. Epub 2021 Jun 19. J Clin Virol. 2021. PMID: 34198050 Free PMC article. No abstract available.
Clinical, Virologic, and Immunologic Evaluation of Symptomatic Coronavirus Disease 2019 Rebound Following Nirmatrelvir/Ritonavir Treatment.
Epling BP, Rocco JM, Boswell KL, Laidlaw E, Galindo F, Kellogg A, Das S, Roder A, Ghedin E, Kreitman A, Dewar RL, Kelly SEM, Kalish H, Rehman T, Highbarger J, Rupert A, Kocher G, Holbrook MR, Lisco A, Manion M, Koup RA, Sereti I. Epling BP, et al. Clin Infect Dis. 2023 Feb 18;76(4):573-581. doi: 10.1093/cid/ciac663. Clin Infect Dis. 2023. PMID: 36200701 Free PMC article.
Successful lung transplantation using an allograft from a COVID-19-recovered donor: a potential role for subgenomic RNA to guide organ utilization.
Saharia KK, Ramelli SC, Stein SR, Roder AE, Kreitman A, Banakis S, Chung JY, Burbelo PD, Singh M, Reed RM, Patel V, Rabin J, Krupnick AS, Cohen JI, de Wit E, Ghedin E, Hewitt SM, Vannella KM, Chertow DS, Grazioli A. Saharia KK, et al. Among authors: roder ae. Am J Transplant. 2023 Jan;23(1):101-107. doi: 10.1016/j.ajt.2022.09.001. Epub 2023 Jan 11. Am J Transplant. 2023. PMID: 36695611 Free PMC article.
Accurate virus identification with interpretable Raman signatures by machine learning.
Ye J, Yeh YT, Xue Y, Wang Z, Zhang N, Liu H, Zhang K, Ricker R, Yu Z, Roder A, Perea Lopez N, Organtini L, Greene W, Hafenstein S, Lu H, Ghedin E, Terrones M, Huang S, Huang SX. Ye J, et al. Proc Natl Acad Sci U S A. 2022 Jun 7;119(23):e2118836119. doi: 10.1073/pnas.2118836119. Epub 2022 Jun 2. Proc Natl Acad Sci U S A. 2022. PMID: 35653572 Free PMC article.
Optimized Quantification of Intrahost Viral Diversity in SARS-CoV-2 and Influenza Virus Sequence Data.
Roder AE, Johnson K, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lassig M, Åuksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. bioRxiv [Preprint]. 2022 Aug 16:2021.05.05.442873. doi: 10.1101/2021.05.05.442873. bioRxiv. 2022. Update in: mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23. PMID: 36656775 Free PMC article. Updated. Preprint.
COVID-19 redux: clinical, virologic, and immunologic evaluation of clinical rebound after nirmatrelvir/ritonavir.
Epling BP, Rocco JM, Boswell KL, Laidlaw E, Galindo F, Kellogg A, Das S, Roder A, Ghedin E, Kreitman A, Dewar RL, Kelly SEM, Kalish H, Rehman T, Highbarger J, Rupert A, Kocher G, Holbrook MR, Lisco A, Manion M, Koup RA, Sereti I. Epling BP, et al. medRxiv [Preprint]. 2022 Jun 17:2022.06.16.22276392. doi: 10.1101/2022.06.16.22276392. medRxiv. 2022. Update in: Clin Infect Dis. 2023 Feb 18;76(4):573-581. doi: 10.1093/cid/ciac663. PMID: 35734093 Free PMC article. Updated. Preprint.
14 results