Zhao XM - Search Results

1

A catalog of small proteins from the global microbiome.

Duan Y, Santos-Júnior CD, Schmidt TS, Fullam A, de Almeida BLS, Zhu C, Kuhn M, Zhao XM, Bork P, Coelho LP. Duan Y, et al. Among authors: zhao xm. Nat Commun. 2024 Aug 31;15(1):7563. doi: 10.1038/s41467-024-51894-6. Nat Commun. 2024. PMID: 39214983 Free PMC article.

2

The exploration of network motifs as potential drug targets from post-translational regulatory networks.

Zhang XD, Song J, Bork P, Zhao XM. Zhang XD, et al. Among authors: zhao xm. Sci Rep. 2016 Feb 8;6:20558. doi: 10.1038/srep20558. Sci Rep. 2016. PMID: 26853265 Free PMC article.

3

OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines.

Chen WH, Lu G, Chen X, Zhao XM, Bork P. Chen WH, et al. Among authors: zhao xm. Nucleic Acids Res. 2017 Jan 4;45(D1):D940-D944. doi: 10.1093/nar/gkw1013. Epub 2016 Oct 30. Nucleic Acids Res. 2017. PMID: 27799467 Free PMC article.

4

GEAR: A database of Genomic Elements Associated with drug Resistance.

Wang YY, Chen WH, Xiao PP, Xie WB, Luo Q, Bork P, Zhao XM. Wang YY, et al. Among authors: zhao xm. Sci Rep. 2017 Mar 15;7:44085. doi: 10.1038/srep44085. Sci Rep. 2017. PMID: 28294141 Free PMC article.

5

MVP: a microbe-phage interaction database.

Gao NL, Zhang C, Zhang Z, Hu S, Lercher MJ, Zhao XM, Bork P, Liu Z, Chen WH. Gao NL, et al. Among authors: zhao xm. Nucleic Acids Res. 2018 Jan 4;46(D1):D700-D707. doi: 10.1093/nar/gkx1124. Nucleic Acids Res. 2018. PMID: 29177508 Free PMC article.

6

OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines.

Gurumayum S, Jiang P, Hao X, Campos TL, Young ND, Korhonen PK, Gasser RB, Bork P, Zhao XM, He LJ, Chen WH. Gurumayum S, et al. Among authors: zhao xm. Nucleic Acids Res. 2021 Jan 8;49(D1):D998-D1003. doi: 10.1093/nar/gkaa884. Nucleic Acids Res. 2021. PMID: 33084874 Free PMC article.

7

A 12-genus bacterial signature identifies a group of severe autistic children with differential sensory behavior and brain structures.

Shi K, Zhang L, Yu J, Chen Z, Lai S, Zhao X, Li WG, Luo Q, Lin W, Feng J, Bork P, Zhao XM, Li F. Shi K, et al. Among authors: zhao x, zhao xm. Clin Transl Med. 2021 Feb;11(2):e314. doi: 10.1002/ctm2.314. Clin Transl Med. 2021. PMID: 33634969 Free PMC article. No abstract available.

8

Towards the biogeography of prokaryotic genes.

Coelho LP, Alves R, Del Río ÁR, Myers PN, Cantalapiedra CP, Giner-Lamia J, Schmidt TS, Mende DR, Orakov A, Letunic I, Hildebrand F, Van Rossum T, Forslund SK, Khedkar S, Maistrenko OM, Pan S, Jia L, Ferretti P, Sunagawa S, Zhao XM, Nielsen HB, Huerta-Cepas J, Bork P. Coelho LP, et al. Among authors: zhao xm. Nature. 2022 Jan;601(7892):252-256. doi: 10.1038/s41586-021-04233-4. Epub 2021 Dec 15. Nature. 2022. PMID: 34912116 Free PMC article.

9

SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing.

Pan S, Zhao XM, Coelho LP. Pan S, et al. Among authors: zhao xm. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i21-i29. doi: 10.1093/bioinformatics/btad209. Bioinformatics. 2023. PMID: 37387171 Free PMC article.

10

Long-read sequencing reveals extensive gut phageome structural variations driven by genetic exchange with bacterial hosts.

Lai S, Wang H, Bork P, Chen WH, Zhao XM. Lai S, et al. Among authors: zhao xm. Sci Adv. 2024 Aug 16;10(33):eadn3316. doi: 10.1126/sciadv.adn3316. Epub 2024 Aug 14. Sci Adv. 2024. PMID: 39141729 Free PMC article.

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