Yang W - Search Results

1

Community assessment of methods to deconvolve cellular composition from bulk gene expression.

White BS, de Reyniès A, Newman AM, Waterfall JJ, Lamb A, Petitprez F, Lin Y, Yu R, Guerrero-Gimenez ME, Domanskyi S, Monaco G, Chung V, Banerjee J, Derrick D, Valdeolivas A, Li H, Xiao X, Wang S, Zheng F, Yang W, Catania CA, Lang BJ, Bertus TJ, Piermarocchi C, Caruso FP, Ceccarelli M, Yu T, Guo X, Bletz J, Coller J, Maecker H, Duault C, Shokoohi V, Patel S, Liliental JE, Simon S; Tumor Deconvolution DREAM Challenge consortium; Saez-Rodriguez J, Heiser LM, Guinney J, Gentles AJ. White BS, et al. Among authors: yang w. Nat Commun. 2024 Aug 27;15(1):7362. doi: 10.1038/s41467-024-50618-0. Nat Commun. 2024. PMID: 39191725 Free PMC article.

2

UltraStrain: An NGS-Based Ultra Sensitive Strain Typing Method for Salmonella enterica.

Yang W, Huang L, Shi C, Wang L, Yu R. Yang W, et al. Front Genet. 2019 Apr 3;10:276. doi: 10.3389/fgene.2019.00276. eCollection 2019. Front Genet. 2019. PMID: 31001322 Free PMC article.

3

ScaleQC: a scalable lossy to lossless solution for NGS data compression.

Yu R, Yang W. Yu R, et al. Among authors: yang w. Bioinformatics. 2020 Nov 1;36(17):4551-4559. doi: 10.1093/bioinformatics/btaa543. Bioinformatics. 2020. PMID: 32458976

4

Performance evaluation of lossy quality compression algorithms for RNA-seq data.

Yu R, Yang W, Wang S. Yu R, et al. Among authors: yang w. BMC Bioinformatics. 2020 Jul 20;21(1):321. doi: 10.1186/s12859-020-03658-4. BMC Bioinformatics. 2020. PMID: 32689929 Free PMC article.

5

A machine learning framework to determine geolocations from metagenomic profiling.

Huang L, Xu C, Yang W, Yu R. Huang L, et al. Among authors: yang w. Biol Direct. 2020 Nov 23;15(1):27. doi: 10.1186/s13062-020-00278-z. Biol Direct. 2020. PMID: 33225966 Free PMC article.

6

Diamond: a multi-modal DIA mass spectrometry data processing pipeline.

Li C, Gao M, Yang W, Zhong C, Yu R. Li C, et al. Among authors: yang w. Bioinformatics. 2021 Apr 19;37(2):265-267. doi: 10.1093/bioinformatics/btaa1093. Bioinformatics. 2021. PMID: 33416868

7

Snipe: highly sensitive pathogen detection from metagenomic sequencing data.

Huang L, Hong B, Yang W, Wang L, Yu R. Huang L, et al. Among authors: yang w. Brief Bioinform. 2021 Sep 2;22(5):bbab064. doi: 10.1093/bib/bbab064. Brief Bioinform. 2021. PMID: 33822895

8

Comparison of high-throughput single-cell RNA sequencing data processing pipelines.

Gao M, Ling M, Tang X, Wang S, Xiao X, Qiao Y, Yang W, Yu R. Gao M, et al. Among authors: yang w. Brief Bioinform. 2021 May 20;22(3):bbaa116. doi: 10.1093/bib/bbaa116. Brief Bioinform. 2021. PMID: 34020539

9

Inconsistent prediction capability of ImmuneCells.Sig across different RNA-seq datasets.

Xiao X, Xu C, Yang W, Yu R. Xiao X, et al. Among authors: yang w. Nat Commun. 2021 Jul 7;12(1):4167. doi: 10.1038/s41467-021-24303-5. Nat Commun. 2021. PMID: 34234113 Free PMC article. No abstract available.

10

Dice-XMBD: Deep Learning-Based Cell Segmentation for Imaging Mass Cytometry.

Xiao X, Qiao Y, Jiao Y, Fu N, Yang W, Wang L, Yu R, Han J. Xiao X, et al. Among authors: yang w. Front Genet. 2021 Sep 15;12:721229. doi: 10.3389/fgene.2021.721229. eCollection 2021. Front Genet. 2021. PMID: 34603385 Free PMC article.

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