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Author Correction: A benchmark of computational methods for correcting biases of established and unknown origin in CRISPR-Cas9 screening data.
Genome Biol. 2024 Sep 4;25(1):239. doi: 10.1186/s13059-024-03387-4.
Genome Biol. 2024.
PMID: 39232777
Free PMC article.
No abstract available.
A benchmark of computational methods for correcting biases of established and unknown origin in CRISPR-Cas9 screening data.
Vinceti A, Iannuzzi RM, Boyle I, Trastulla L, Campbell CD, Vazquez F, Dempster JM, Iorio F.
Vinceti A, et al.
Genome Biol. 2024 Jul 19;25(1):192. doi: 10.1186/s13059-024-03336-1.
Genome Biol. 2024.
PMID: 39030569
Free PMC article.
Item in Clipboard
An interactive web application for processing, correcting, and visualizing genome-wide pooled CRISPR-Cas9 screens.
Vinceti A, De Lucia RR, Cremaschi P, Perron U, Karakoc E, Mauri L, Fernandez C, Kluczynski KH, Anderson DS, Iorio F.
Vinceti A, et al.
Cell Rep Methods. 2023 Jan 3;3(1):100373. doi: 10.1016/j.crmeth.2022.100373. eCollection 2023 Jan 23.
Cell Rep Methods. 2023.
PMID: 36814834
Free PMC article.
Item in Clipboard
A heuristic algorithm solving the mutual-exclusivity-sorting problem.
Vinceti A, Trastulla L, Perron U, Raiconi A, Iorio F.
Vinceti A, et al.
Bioinformatics. 2023 Jan 1;39(1):btad016. doi: 10.1093/bioinformatics/btad016.
Bioinformatics. 2023.
PMID: 36669133
Free PMC article.
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Phenotypic plasticity and genetic control in colorectal cancer evolution.
Househam J, Heide T, Cresswell GD, Spiteri I, Kimberley C, Zapata L, Lynn C, James C, Mossner M, Fernandez-Mateos J, Vinceti A, Baker AM, Gabbutt C, Berner A, Schmidt M, Chen B, Lakatos E, Gunasri V, Nichol D, Costa H, Mitchinson M, Ramazzotti D, Werner B, Iorio F, Jansen M, Caravagna G, Barnes CP, Shibata D, Bridgewater J, Rodriguez-Justo M, Magnani L, Sottoriva A, Graham TA.
Househam J, et al. Among authors: vinceti a.
Nature. 2022 Nov;611(7937):744-753. doi: 10.1038/s41586-022-05311-x. Epub 2022 Oct 26.
Nature. 2022.
PMID: 36289336
Free PMC article.
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Reduced gene templates for supervised analysis of scale-limited CRISPR-Cas9 fitness screens.
Vinceti A, Perron U, Trastulla L, Iorio F.
Vinceti A, et al.
Cell Rep. 2022 Jul 26;40(4):111145. doi: 10.1016/j.celrep.2022.111145.
Cell Rep. 2022.
PMID: 35905712
Free article.
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CoRe: a robustly benchmarked R package for identifying core-fitness genes in genome-wide pooled CRISPR-Cas9 screens.
Vinceti A, Karakoc E, Pacini C, Perron U, De Lucia RR, Garnett MJ, Iorio F.
Vinceti A, et al.
BMC Genomics. 2021 Nov 17;22(1):828. doi: 10.1186/s12864-021-08129-5.
BMC Genomics. 2021.
PMID: 34789150
Free PMC article.
Item in Clipboard
Minimal genome-wide human CRISPR-Cas9 library.
Gonçalves E, Thomas M, Behan FM, Picco G, Pacini C, Allen F, Vinceti A, Sharma M, Jackson DA, Price S, Beaver CM, Dovey O, Parry-Smith D, Iorio F, Parts L, Yusa K, Garnett MJ.
Gonçalves E, et al. Among authors: vinceti a.
Genome Biol. 2021 Jan 21;22(1):40. doi: 10.1186/s13059-021-02268-4.
Genome Biol. 2021.
PMID: 33478580
Free PMC article.
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