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FUSION: A web-based application for in-depth exploration of multi-omics data with brightfield histology.
Border S, Ferreira RM, Lucarelli N, Manthey D, Kumar S, Paul A, Mimar S, Naglah A, Cheng YH, Barisoni L, Ray J, Strekalova Y, Rosenberg AZ, Tomaszewski JE, Hodgin JB; HuBMAP consortium; El-Achkar TM, Jain S, Eadon MT, Sarder P. Border S, et al. Among authors: barisoni l. bioRxiv [Preprint]. 2024 Aug 22:2024.07.09.602778. doi: 10.1101/2024.07.09.602778. bioRxiv. 2024. PMID: 39026885 Free PMC article. Preprint.
ComPRePS: An Automated Cloud-based Image Analysis tool to democratize AI in Digital Pathology.
Mimar S, Paul AS, Lucarelli N, Border S, Santo BA, Naglah A, Barisoni L, Hodgin J, Rosenberg AZ, Clapp W, Sarder P; Kidney Precision Medicine Project. Mimar S, et al. Among authors: barisoni l. bioRxiv [Preprint]. 2024 Apr 5:2024.03.21.586102. doi: 10.1101/2024.03.21.586102. bioRxiv. 2024. Update in: Proc SPIE Int Soc Opt Eng. 2024 Feb;12933:129330Z. doi: 10.1117/12.3008469 PMID: 38585837 Free PMC article. Updated. Preprint.
Quantification of Glomerular Structural Lesions: Associations With Clinical Outcomes and Transcriptomic Profiles in Nephrotic Syndrome.
Hodgin JB, Mariani LH, Zee J, Liu Q, Smith AR, Eddy S, Hartman J, Hamidi H, Gaut JP, Palmer MB, Nast CC, Chang A, Hewitt S, Gillespie BW, Kretzler M, Holzman LB, Barisoni L; Nephrotic Syndrome Study Network (NEPTUNE). Hodgin JB, et al. Among authors: barisoni l. Am J Kidney Dis. 2022 Jun;79(6):807-819.e1. doi: 10.1053/j.ajkd.2021.10.004. Epub 2021 Dec 3. Am J Kidney Dis. 2022. PMID: 34864148 Free PMC article.
Computational staining of CD3/CD20 positive lymphocytes in human tissues with experimental confirmation in a genetically engineered mouse model.
Li X, Heirman CC, Rickard AG, Sotolongo G, Castillo R, Adanlawo T, Everitt JI, Hodgin JB, Watts TL, Janowczyk A, Mowery YM, Barisoni L, Lafata KJ. Li X, et al. Among authors: barisoni l. Front Immunol. 2024 Oct 28;15:1451261. doi: 10.3389/fimmu.2024.1451261. eCollection 2024. Front Immunol. 2024. PMID: 39530103 Free PMC article.
Clinical Relevance of Computationally Derived Tubular Features: Spatial Relationships and the Development of Tubulointerstitial Scarring in MCD/FSGS.
Fan F, Liu Q, Zee J, Ozeki T, Demeke D, Yang Y, Farris AB, Wang B, Shah M, Jacobs J, Mariani L, Lafata K, Rubin J, Chen Y, Holzman L, Hodgin JB, Madabhushi A, Barisoni L, Janowczyk A. Fan F, et al. Among authors: barisoni l. medRxiv [Preprint]. 2024 Jul 21:2024.07.19.24310619. doi: 10.1101/2024.07.19.24310619. medRxiv. 2024. PMID: 39072032 Free PMC article. Preprint.
CohortFinder: an open-source tool for data-driven partitioning of digital pathology and imaging cohorts to yield robust machine-learning models.
Fan F, Martinez G, DeSilvio T, Shin J, Chen Y, Jacobs J, Wang B, Ozeki T, Lafarge MW, Koelzer VH, Barisoni L, Madabhushi A, Viswanath SE, Janowczyk A. Fan F, et al. Among authors: barisoni l. Npj Imaging. 2024;2(1):15. doi: 10.1038/s44303-024-00018-2. Epub 2024 Jul 1. Npj Imaging. 2024. PMID: 38962496 Free PMC article.
PatchSorter: a high throughput deep learning digital pathology tool for object labeling.
Walker C, Talawalla T, Toth R, Ambekar A, Rea K, Chamian O, Fan F, Berezowska S, Rottenberg S, Madabhushi A, Maillard M, Barisoni L, Horlings HM, Janowczyk A. Walker C, et al. Among authors: barisoni l. NPJ Digit Med. 2024 Jun 20;7(1):164. doi: 10.1038/s41746-024-01150-4. NPJ Digit Med. 2024. PMID: 38902336 Free PMC article.
146 results