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Page 1
Local genetic adaptation to habitat in wild chimpanzees.
Ostridge HJ, Fontsere C, Lizano E, Soto DC, Schmidt JM, Saxena V, Alvarez-Estape M, Barratt CD, Gratton P, Bocksberger G, Lester JD, Dieguez P, Agbor A, Angedakin S, Assumang AK, Bailey E, Barubiyo D, Bessone M, Brazzola G, Chancellor R, Cohen H, Coupland C, Danquah E, Deschner T, Dotras L, Dupain J, Egbe VE, Granjon AC, Head J, Hedwig D, Hermans V, Hernandez-Aguilar RA, Jeffery KJ, Jones S, Junker J, Kadam P, Kaiser M, Kalan AK, Kambere M, Kienast I, Kujirakwinja D, Langergraber KE, Lapuente J, Larson B, Laudisoit A, Lee KC, Llana M, Maretti G, Martín R, Meier A, Morgan D, Neil E, Nicholl S, Nixon S, Normand E, Orbell C, Ormsby LJ, Orume R, Pacheco L, Preece J, Regnaut S, Robbins MM, Rundus A, Sanz C, Sciaky L, Sommer V, Stewart FA, Tagg N, Tédonzong LR, van Schijndel J, Vendras E, Wessling EG, Willie J, Wittig RM, Yuh YG, Yurkiw K, Vigilant L, Piel A, Boesch C, Kühl HS, Dennis MY, Marques-Bonet T, Arandjelovic M, Andrés AM. Ostridge HJ, et al. Among authors: alvarez estape m. bioRxiv [Preprint]. 2024 Jul 9:2024.07.09.601734. doi: 10.1101/2024.07.09.601734. bioRxiv. 2024. PMID: 39026872 Free PMC article. Preprint.
Ghost admixture in eastern gorillas.
Pawar H, Rymbekova A, Cuadros-Espinoza S, Huang X, de Manuel M, van der Valk T, Lobon I, Alvarez-Estape M, Haber M, Dolgova O, Han S, Esteller-Cucala P, Juan D, Ayub Q, Bautista R, Kelley JL, Cornejo OE, Lao O, Andrés AM, Guschanski K, Ssebide B, Cranfield M, Tyler-Smith C, Xue Y, Prado-Martinez J, Marques-Bonet T, Kuhlwilm M. Pawar H, et al. Among authors: alvarez estape m. Nat Ecol Evol. 2023 Sep;7(9):1503-1514. doi: 10.1038/s41559-023-02145-2. Epub 2023 Jul 27. Nat Ecol Evol. 2023. PMID: 37500909 Free PMC article.
Past Connectivity but Recent Inbreeding in Cross River Gorillas Determined Using Whole Genomes from Single Hairs.
Alvarez-Estape M, Pawar H, Fontsere C, Trujillo AE, Gunson JL, Bergl RA, Bermejo M, Linder JM, McFarland K, Oates JF, Sunderland-Groves JL, Orkin J, Higham JP, Viaud-Martinez KA, Lizano E, Marques-Bonet T. Alvarez-Estape M, et al. Genes (Basel). 2023 Mar 18;14(3):743. doi: 10.3390/genes14030743. Genes (Basel). 2023. PMID: 36981014 Free PMC article.
Transcriptome innovations in primates revealed by single-molecule long-read sequencing.
Ferrández-Peral L, Zhan X, Alvarez-Estape M, Chiva C, Esteller-Cucala P, García-Pérez R, Julià E, Lizano E, Fornas Ò, Sabidó E, Li Q, Marquès-Bonet T, Juan D, Zhang G. Ferrández-Peral L, et al. Among authors: alvarez estape m. Genome Res. 2022 Aug 25;32(8):1448-1462. doi: 10.1101/gr.276395.121. Genome Res. 2022. PMID: 35840341 Free PMC article.
Population dynamics and genetic connectivity in recent chimpanzee history.
Fontsere C, Kuhlwilm M, Morcillo-Suarez C, Alvarez-Estape M, Lester JD, Gratton P, Schmidt JM, Dieguez P, Aebischer T, Álvarez-Varona P, Agbor A, Angedakin S, Assumang AK, Ayimisin EA, Bailey E, Barubiyo D, Bessone M, Carretero-Alonso A, Chancellor R, Cohen H, Danquah E, Deschner T, Dunn A, Dupain J, Egbe VE, Feliu O, Goedmakers A, Granjon AC, Head J, Hedwig D, Hermans V, Hernandez-Aguilar RA, Imong I, Jones S, Junker J, Kadam P, Kaiser M, Kambere M, Kambale MV, Kalan AK, Kienast I, Kujirakwinja D, Langergraber K, Lapuente J, Larson B, Laudisoit A, Lee K, Llana M, Llorente M, Marrocoli S, Morgan D, Mulindahabi F, Murai M, Neil E, Nicholl S, Nixon S, Normand E, Orbell C, Ormsby LJ, Pacheco L, Piel A, Riera L, Robbins MM, Rundus A, Sanz C, Sciaky L, Sommer V, Stewart FA, Tagg N, Tédonzong LR, Ton E, van Schijndel J, Vergnes V, Wessling EG, Willie J, Wittig RM, Yuh YG, Yurkiw K, Zuberbuehler K, Hecht J, Vigilant L, Boesch C, Andrés AM, Hughes DA, Kühl HS, Lizano E, Arandjelovic M, Marques-Bonet T. Fontsere C, et al. Among authors: alvarez estape m. Cell Genom. 2022 Jun 8;2(6):None. doi: 10.1016/j.xgen.2022.100133. Cell Genom. 2022. PMID: 35711737 Free PMC article.
HuConTest: Testing Human Contamination in Great Ape Samples.
Kuhlwilm M, Fontsere C, Han S, Alvarez-Estape M, Marques-Bonet T. Kuhlwilm M, et al. Among authors: alvarez estape m. Genome Biol Evol. 2021 Jun 8;13(6):evab117. doi: 10.1093/gbe/evab117. Genome Biol Evol. 2021. PMID: 34038549 Free PMC article.
Maximizing the acquisition of unique reads in noninvasive capture sequencing experiments.
Fontsere C, Alvarez-Estape M, Lester J, Arandjelovic M, Kuhlwilm M, Dieguez P, Agbor A, Angedakin S, Ayuk Ayimisin E, Bessone M, Brazzola G, Deschner T, Eno-Nku M, Granjon AC, Head J, Kadam P, Kalan AK, Kambi M, Langergraber K, Lapuente J, Maretti G, Jayne Ormsby L, Piel A, Robbins MM, Stewart F, Vergnes V, Wittig RM, Kühl HS, Marques-Bonet T, Hughes DA, Lizano E. Fontsere C, et al. Among authors: alvarez estape m. Mol Ecol Resour. 2021 Apr;21(3):745-761. doi: 10.1111/1755-0998.13300. Epub 2020 Dec 19. Mol Ecol Resour. 2021. PMID: 33217149
Selective single molecule sequencing and assembly of a human Y chromosome of African origin.
Kuderna LFK, Lizano E, Julià E, Gomez-Garrido J, Serres-Armero A, Kuhlwilm M, Alandes RA, Alvarez-Estape M, Juan D, Simon H, Alioto T, Gut M, Gut I, Schierup MH, Fornas O, Marques-Bonet T. Kuderna LFK, et al. Among authors: alvarez estape m. Nat Commun. 2019 Jan 2;10(1):4. doi: 10.1038/s41467-018-07885-5. Nat Commun. 2019. PMID: 30602775 Free PMC article.