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Single-cell RNA-sequencing identifies unique cell-specific gene expression profiles in high-grade cardiac allograft vasculopathy.
Amancherla K, Schlendorf KH, Chow N, Sheng Q, Freedman JE, Rathmell JC. Amancherla K, et al. Among authors: rathmell jc. bioRxiv [Preprint]. 2024 Jul 12:2024.07.10.602989. doi: 10.1101/2024.07.10.602989. bioRxiv. 2024. Update in: J Heart Lung Transplant. 2024 Nov 21:S1053-2498(24)01963-6. doi: 10.1016/j.healun.2024.11.017 PMID: 39026730 Free PMC article. Updated. Preprint.
T cells specific for α-myosin drive immunotherapy-related myocarditis.
Axelrod ML, Meijers WC, Screever EM, Qin J, Carroll MG, Sun X, Tannous E, Zhang Y, Sugiura A, Taylor BC, Hanna A, Zhang S, Amancherla K, Tai W, Wright JJ, Wei SC, Opalenik SR, Toren AL, Rathmell JC, Ferrell PB, Phillips EJ, Mallal S, Johnson DB, Allison JP, Moslehi JJ, Balko JM. Axelrod ML, et al. Among authors: rathmell jc. Nature. 2022 Nov;611(7937):818-826. doi: 10.1038/s41586-022-05432-3. Epub 2022 Nov 16. Nature. 2022. PMID: 36385524 Free PMC article.
Single-Cell Profiling of the Antigen-Specific Response to BNT162b2 SARS-CoV-2 RNA Vaccine.
Kramer KJ, Wilfong EM, Voss K, Barone SM, Shiakolas AR, Raju N, Roe CE, Suryadevara N, Walker L, Wall SC, Paulo A, Schaefer S, Dahunsi D, Westlake CS, Crowe JE, Carnahan RH, Rathmell JC, Bonami RH, Georgiev IS, Irish JM. Kramer KJ, et al. Among authors: rathmell jc. bioRxiv [Preprint]. 2021 Jul 28:2021.07.28.453981. doi: 10.1101/2021.07.28.453981. bioRxiv. 2021. Update in: Nat Commun. 2022 Jun 16;13(1):3466. doi: 10.1038/s41467-022-31142-5 PMID: 34341788 Free PMC article. Updated. Preprint.
Single cell analysis of cribriform prostate cancer reveals cell intrinsic and tumor microenvironmental pathways of aggressive disease.
Wong HY, Sheng Q, Hesterberg AB, Croessmann S, Rios BL, Giri K, Jackson J, Miranda AX, Watkins E, Schaffer KR, Donahue M, Winkler E, Penson DF, Smith JA, Herrell SD, Luckenbaugh AN, Barocas DA, Kim YJ, Graves D, Giannico GA, Rathmell JC, Park BH, Gordetsky JB, Hurley PJ. Wong HY, et al. Among authors: rathmell jc. Nat Commun. 2022 Oct 13;13(1):6036. doi: 10.1038/s41467-022-33780-1. Nat Commun. 2022. PMID: 36229464 Free PMC article.
Trem2 deficiency attenuates breast cancer tumor growth in lean, but not obese or weight loss, mice and is associated with alterations of clonal T cell populations.
Pierro EW, Cottam MA, An H, Lehmann BD, Pietenpol JA, Wellen KE, Makowski L, Rathmell JC, Fingleton B, Hasty AH. Pierro EW, et al. Among authors: rathmell jc. bioRxiv [Preprint]. 2024 Sep 27:2024.09.25.614811. doi: 10.1101/2024.09.25.614811. bioRxiv. 2024. PMID: 39386686 Free PMC article. Preprint.
Velociraptor: Cross-Platform Quantitative Search Using Hallmark Cell Features.
Cross CE, Mayeda C, Medina S, Hayes MJ, Kaviany S, Connelly JA, Rathmell JC, Weaver KD, Thompson RC, Chambless LB, Ihrie RA, Irish JM. Cross CE, et al. Among authors: rathmell jc. bioRxiv [Preprint]. 2024 May 4:2024.05.01.591375. doi: 10.1101/2024.05.01.591375. bioRxiv. 2024. PMID: 38746337 Free PMC article. Preprint.
Metabolite profiling of human renal cell carcinoma reveals tissue-origin dominance in nutrient availability.
Abbott KL, Ali A, Reinfeld BI, Deik A, Subudhi S, Landis MD, Hongo RA, Young KL, Kunchok T, Nabel CS, Crowder KD, Kent JR, Madariaga MLL, Jain RK, Beckermann KE, Lewis CA, Clish CB, Muir A, Rathmell WK, Rathmell JC, Vander Heiden MG. Abbott KL, et al. Among authors: rathmell jc, rathmell wk. bioRxiv [Preprint]. 2024 Apr 8:2023.12.24.573250. doi: 10.1101/2023.12.24.573250. bioRxiv. 2024. Update in: Elife. 2024 May 24;13:RP95652. doi: 10.7554/eLife.95652 PMID: 38187626 Free PMC article. Updated. Preprint.
Temporal recording of mammalian development and precancer.
Islam M, Yang Y, Simmons AJ, Shah VM, Pavan MK, Xu Y, Tasneem N, Chen Z, Trinh LT, Molina P, Ramirez-Solano MA, Sadien I, Dou J, Chen K, Magnuson MA, Rathmell JC, Macara IG, Winton D, Liu Q, Zafar H, Kalhor R, Church GM, Shrubsole MJ, Coffey RJ, Lau KS. Islam M, et al. Among authors: rathmell jc. bioRxiv [Preprint]. 2023 Dec 19:2023.12.18.572260. doi: 10.1101/2023.12.18.572260. bioRxiv. 2023. Update in: Nature. 2024 Oct;634(8036):1187-1195. doi: 10.1038/s41586-024-07954-4 PMID: 38187699 Free PMC article. Updated. Preprint.
Functional Overlap of Inborn Errors of Immunity and Metabolism Genes Define T Cell Immunometabolic Vulnerabilities.
Patterson AR, Needle GA, Sugiura A, Chi C, Steiner KK, Fisher EL, Robertson GL, Bodnya C, Markle JG, Gama V, Rathmell JC. Patterson AR, et al. Among authors: rathmell jc. bioRxiv [Preprint]. 2023 Jan 24:2023.01.24.525419. doi: 10.1101/2023.01.24.525419. bioRxiv. 2023. Update in: Sci Immunol. 2024 Aug 16;9(98):eadh0368. doi: 10.1126/sciimmunol.adh0368 PMID: 36747715 Free PMC article. Updated. Preprint.
230 results