Lèbre S - Search Results

1

TFscope: systematic analysis of the sequence features involved in the binding preferences of transcription factors.

Romero R, Menichelli C, Vroland C, Marin JM, Lèbre S, Lecellier CH, Bréhélin L. Romero R, et al. Among authors: lebre s. Genome Biol. 2024 Jul 10;25(1):187. doi: 10.1186/s13059-024-03321-8. Genome Biol. 2024. PMID: 38987807 Free PMC article.

2

Optimizing data integration improves gene regulatory network inference in Arabidopsis thaliana.

Cassan O, Lecellier CH, Martin A, Bréhélin L, Lèbre S. Cassan O, et al. Among authors: lebre s. Bioinformatics. 2024 Jul 1;40(7):btae415. doi: 10.1093/bioinformatics/btae415. Bioinformatics. 2024. PMID: 38913855 Free PMC article.

3

Natural genetic variation underlying the negative effect of elevated CO₂ on ionome composition in Arabidopsis thaliana.

Cassan O, Pimpare LL, Mozzanino T, Fizames C, Devidal S, Roux F, Milcu A, Lebre S, Gojon A, Martin A. Cassan O, et al. Among authors: lebre s. Elife. 2024 May 23;12:RP90170. doi: 10.7554/eLife.90170. Elife. 2024. PMID: 38780431 Free PMC article.

4

A gene regulatory network in Arabidopsis roots reveals features and regulators of the plant response to elevated CO₂.

Cassan O, Pimparé LL, Dubos C, Gojon A, Bach L, Lèbre S, Martin A. Cassan O, et al. Among authors: lebre s. New Phytol. 2023 Aug;239(3):992-1004. doi: 10.1111/nph.18788. Epub 2023 Feb 22. New Phytol. 2023. PMID: 36727308 Free article.

5

Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite.

Cassan O, Lèbre S, Martin A. Cassan O, et al. Among authors: lebre s. BMC Genomics. 2021 May 26;22(1):387. doi: 10.1186/s12864-021-07659-2. BMC Genomics. 2021. PMID: 34039282 Free PMC article.

6

Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes.

Menichelli C, Guitard V, Martins RM, Lèbre S, Lopez-Rubio JJ, Lecellier CH, Bréhélin L. Menichelli C, et al. Among authors: lebre s. PLoS Comput Biol. 2021 Apr 16;17(4):e1008909. doi: 10.1371/journal.pcbi.1008909. eCollection 2021 Apr. PLoS Comput Biol. 2021. PMID: 33861755 Free PMC article.

7

Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers.

Bejjani F, Tolza C, Boulanger M, Downes D, Romero R, Maqbool MA, Zine El Aabidine A, Andrau JC, Lebre S, Brehelin L, Parrinello H, Rohmer M, Kaoma T, Vallar L, Hughes JR, Zibara K, Lecellier CH, Piechaczyk M, Jariel-Encontre I. Bejjani F, et al. Among authors: lebre s. Nucleic Acids Res. 2021 Mar 18;49(5):2488-2508. doi: 10.1093/nar/gkab053. Nucleic Acids Res. 2021. PMID: 33533919 Free PMC article.

8

Probing transcription factor combinatorics in different promoter classes and in enhancers.

Vandel J, Cassan O, Lèbre S, Lecellier CH, Bréhélin L. Vandel J, et al. Among authors: lebre s. BMC Genomics. 2019 Feb 1;20(1):103. doi: 10.1186/s12864-018-5408-0. BMC Genomics. 2019. PMID: 30709337 Free PMC article.

9

Probing instructions for expression regulation in gene nucleotide compositions.

Bessière C, Taha M, Petitprez F, Vandel J, Marin JM, Bréhélin L, Lèbre S, Lecellier CH. Bessière C, et al. Among authors: lebre s. PLoS Comput Biol. 2018 Jan 2;14(1):e1005921. doi: 10.1371/journal.pcbi.1005921. eCollection 2018 Jan. PLoS Comput Biol. 2018. PMID: 29293496 Free PMC article.

10

The combinatorics of overlapping genes.

Lèbre S, Gascuel O. Lèbre S, et al. J Theor Biol. 2017 Feb 21;415:90-101. doi: 10.1016/j.jtbi.2016.09.018. Epub 2016 Oct 11. J Theor Biol. 2017. PMID: 27737786

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