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Page 1
A genome resource for the marine annelid Platynereis dumerilii.
Mutemi KN, Simakov O, Pan L, Santangeli L, Null RW, Handberg-Thorsager M, Vellutini BC, Peterson KJ, Fromm B, Larsson T, Savage EL, Lopez MO, Hercog R, Provaznik J, Ordonez-Rueda D, Azevedo N, Gazave E, Vervoort M, Tomancak P, Tan W, Winkler S, Benes V, Hui J, Helm C, Ozpolat BD, Arendt D. Mutemi KN, et al. Among authors: winkler s. bioRxiv [Preprint]. 2024 Nov 11:2024.06.21.600153. doi: 10.1101/2024.06.21.600153. bioRxiv. 2024. PMID: 38948846 Free PMC article. Preprint.
The round goby genome provides insights into mechanisms that may facilitate biological invasions.
Adrian-Kalchhauser I, Blomberg A, Larsson T, Musilova Z, Peart CR, Pippel M, Solbakken MH, Suurväli J, Walser JC, Wilson JY, Alm Rosenblad M, Burguera D, Gutnik S, Michiels N, Töpel M, Pankov K, Schloissnig S, Winkler S. Adrian-Kalchhauser I, et al. Among authors: winkler s. BMC Biol. 2020 Jan 28;18(1):11. doi: 10.1186/s12915-019-0731-8. BMC Biol. 2020. PMID: 31992286 Free PMC article.
A comparative analysis of planarian genomes reveals regulatory conservation in the face of rapid structural divergence.
Ivanković M, Brand JN, Pandolfini L, Brown T, Pippel M, Rozanski A, Schubert T, Grohme MA, Winkler S, Robledillo L, Zhang M, Codino A, Gustincich S, Vila-Farré M, Zhang S, Papantonis A, Marques A, Rink JC. Ivanković M, et al. Among authors: winkler s. Nat Commun. 2024 Sep 19;15(1):8215. doi: 10.1038/s41467-024-52380-9. Nat Commun. 2024. PMID: 39294119 Free PMC article.
Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing.
Dahn HA, Mountcastle J, Balacco J, Winkler S, Bista I, Schmitt AD, Pettersson OV, Formenti G, Oliver K, Smith M, Tan W, Kraus A, Mac S, Komoroske LM, Lama T, Crawford AJ, Murphy RW, Brown S, Scott AF, Morin PA, Jarvis ED, Fedrigo O. Dahn HA, et al. Among authors: winkler s. Gigascience. 2022 Aug 10;11:giac068. doi: 10.1093/gigascience/giac068. Gigascience. 2022. PMID: 35946988 Free PMC article.
Nuclear pleomorphism in canine cutaneous mast cell tumors: Comparison of reproducibility and prognostic relevance between estimates, manual morphometry, and algorithmic morphometry.
Haghofer A, Parlak E, Bartel A, Donovan TA, Assenmacher CA, Bolfa P, Dark MJ, Fuchs-Baumgartinger A, Klang A, Jäger K, Klopfleisch R, Merz S, Richter B, Schulman FY, Janout H, Ganz J, Scharinger J, Aubreville M, Winkler SM, Kiupel M, Bertram CA. Haghofer A, et al. Among authors: winkler sm. Vet Pathol. 2024 Nov 19:3009858241295399. doi: 10.1177/03009858241295399. Online ahead of print. Vet Pathol. 2024. PMID: 39560067
Author Correction: The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.
Mc Cartney AM, Formenti G, Mouton A, De Panis D, Marins LS, Leitão HG, Diedericks G, Kirangwa J, Morselli M, Salces-Ortiz J, Escudero N, Iannucci A, Natali C, Svardal H, Fernández R, De Pooter T, Joris G, Strazisar M, Wood JMD, Herron KE, Seehausen O, Watts PC, Shaw F, Davey RP, Minotto A, Fernández JM, Böhne A, Alegria C, Alioto T, Alves PC, Amorim IR, Aury JM, Backstrom N, Baldrian P, Baltrunaite L, Barta E, BedHom B, Belser C, Bergsten J, Bertrand L, Bilandija H, Binzer-Panchal M, Bista I, Blaxter M, Borges PAV, Dias GB, Bosse M, Brown T, Bruggmann R, Buena-Atienza E, Burgin J, Buzan E, Cariani A, Casadei N, Chiara M, Chozas S, Čiampor F Jr, Crottini A, Cruaud C, Cruz F, Dalen L, De Biase A, Del Campo J, Delic T, Dennis AB, Derks MFL, Diroma MA, Djan M, Duprat S, Eleftheriadi K, Feulner PGD, Flot JF, Forni G, Fosso B, Fournier P, Fournier-Chambrillon C, Gabaldon T, Garg S, Gissi C, Giupponi L, Gomez-Garrido J, González J, Grilo ML, Grüning B, Guerin T, Guiglielmoni N, Gut M, Haesler MP, Hahn C, Halpern B, Harrison PW, Heintz J, Hindrikson M, Höglund J, Howe K, Hughes GM, Istace B, Cock MJ, Janžekovič F, Jonsson ZO, Joye-Dind S, Koskimäki JJ, Krystufek B, Kubacka J, Kuhl H, Kusz… See abstract for full author list ➔ Mc Cartney AM, et al. Among authors: winkler s. NPJ Biodivers. 2024 Oct 15;3(1):31. doi: 10.1038/s44185-024-00065-3. NPJ Biodivers. 2024. PMID: 39407030 Free PMC article. No abstract available.
Long-read sequencing and genome assembly of natural history collection samples and challenging specimens.
Bein B, Chrysostomakis I, Arantes LS, Brown T, Gerheim C, Schell T, Schneider C, Leushkin E, Chen Z, Sigwart J, Gonzalez V, Wong NLWS, Santos FR, Blom MPK, Mayer F, Mazzoni CJ, Böhne A, Winkler S, Greve C, Hiller M. Bein B, et al. Among authors: winkler s. bioRxiv [Preprint]. 2024 Sep 27:2024.03.04.583385. doi: 10.1101/2024.03.04.583385. bioRxiv. 2024. PMID: 39386456 Free PMC article. Preprint.
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.
Mc Cartney AM, Formenti G, Mouton A, De Panis D, Marins LS, Leitão HG, Diedericks G, Kirangwa J, Morselli M, Salces-Ortiz J, Escudero N, Iannucci A, Natali C, Svardal H, Fernández R, De Pooter T, Joris G, Strazisar M, Wood JMD, Herron KE, Seehausen O, Watts PC, Shaw F, Davey RP, Minotto A, Fernández JM, Böhne A, Alegria C, Alioto T, Alves PC, Amorim IR, Aury JM, Backstrom N, Baldrian P, Baltrunaite L, Barta E, BedHom B, Belser C, Bergsten J, Bertrand L, Bilandija H, Binzer-Panchal M, Bista I, Blaxter M, Borges PAV, Dias GB, Bosse M, Brown T, Bruggmann R, Buena-Atienza E, Burgin J, Buzan E, Cariani A, Casadei N, Chiara M, Chozas S, Čiampor F Jr, Crottini A, Cruaud C, Cruz F, Dalen L, De Biase A, Del Campo J, Delic T, Dennis AB, Derks MFL, Diroma MA, Djan M, Duprat S, Eleftheriadi K, Feulner PGD, Flot JF, Forni G, Fosso B, Fournier P, Fournier-Chambrillon C, Gabaldon T, Garg S, Gissi C, Giupponi L, Gomez-Garrido J, González J, Grilo ML, Grüning B, Guerin T, Guiglielmoni N, Gut M, Haesler MP, Hahn C, Halpern B, Harrison PW, Heintz J, Hindrikson M, Höglund J, Howe K, Hughes GM, Istace B, Cock MJ, Janžekovič F, Jonsson ZO, Joye-Dind S, Koskimäki JJ, Krystufek B, Kubacka J, Kuhl H, Kusz… See abstract for full author list ➔ Mc Cartney AM, et al. Among authors: winkler s. NPJ Biodivers. 2024 Sep 17;3(1):28. doi: 10.1038/s44185-024-00054-6. NPJ Biodivers. 2024. PMID: 39289538 Free PMC article.
861 results