Clementi C - Search Results

1

Structure prediction of protein-ligand complexes from sequence information with Umol.

Bryant P, Kelkar A, Guljas A, Clementi C, Noé F. Bryant P, et al. Among authors: clementi c. Nat Commun. 2024 May 28;15(1):4536. doi: 10.1038/s41467-024-48837-6. Nat Commun. 2024. PMID: 38806453 Free PMC article.

2

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction.

Das P, Moll M, Stamati H, Kavraki LE, Clementi C. Das P, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9885-90. doi: 10.1073/pnas.0603553103. Epub 2006 Jun 19. Proc Natl Acad Sci U S A. 2006. PMID: 16785435 Free PMC article.

3

Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment.

Das P, Wilson CJ, Fossati G, Wittung-Stafshede P, Matthews KS, Clementi C. Das P, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14569-74. doi: 10.1073/pnas.0505844102. Epub 2005 Oct 3. Proc Natl Acad Sci U S A. 2005. PMID: 16203982 Free PMC article.

4

Hamiltonian dynamics of homopolymer chain models.

Mossa A, Pettini M, Clementi C. Mossa A, et al. Among authors: clementi c. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Oct;74(4 Pt 1):041805. doi: 10.1103/PhysRevE.74.041805. Epub 2006 Oct 6. Phys Rev E Stat Nonlin Soft Matter Phys. 2006. PMID: 17155086

5

Dynamics of polymer translocation through nanopores: theory meets experiment.

Matysiak S, Montesi A, Pasquali M, Kolomeisky AB, Clementi C. Matysiak S, et al. Among authors: clementi c. Phys Rev Lett. 2006 Mar 24;96(11):118103. doi: 10.1103/PhysRevLett.96.118103. Epub 2006 Mar 22. Phys Rev Lett. 2006. PMID: 16605877

6

Riemannian theory of Hamiltonian chaos and Lyapunov exponents.

Casetti L, Clementi C, Pettini M. Casetti L, et al. Among authors: clementi c. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Dec;54(6):5969-5984. doi: 10.1103/physreve.54.5969. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996. PMID: 9965813 No abstract available.

7

Mapping folding energy landscapes with theory and experiment.

Matysiak S, Clementi C. Matysiak S, et al. Among authors: clementi c. Arch Biochem Biophys. 2008 Jan 1;469(1):29-33. doi: 10.1016/j.abb.2007.08.019. Epub 2007 Aug 29. Arch Biochem Biophys. 2008. PMID: 17910943 Review.

8

Communication: On the locality of hydrogen bond networks at hydrophobic interfaces.

Lambeth BP Jr, Junghans C, Kremer K, Clementi C, Delle Site L. Lambeth BP Jr, et al. Among authors: clementi c. J Chem Phys. 2010 Dec 14;133(22):221101. doi: 10.1063/1.3522773. J Chem Phys. 2010. PMID: 21171675

9

Balancing energy and entropy: a minimalist model for the characterization of protein folding landscapes.

Das P, Matysiak S, Clementi C. Das P, et al. Among authors: clementi c. Proc Natl Acad Sci U S A. 2005 Jul 19;102(29):10141-6. doi: 10.1073/pnas.0409471102. Epub 2005 Jul 8. Proc Natl Acad Sci U S A. 2005. PMID: 16006532 Free PMC article.

10

Kinetic distance and kinetic maps from molecular dynamics simulation.

Noé F, Clementi C. Noé F, et al. Among authors: clementi c. J Chem Theory Comput. 2015 Oct 13;11(10):5002-11. doi: 10.1021/acs.jctc.5b00553. Epub 2015 Sep 11. J Chem Theory Comput. 2015. PMID: 26574285

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