Kaake R - Search Results

1

Mapping Differential Protein-Protein Interaction Networks using Affinity Purification Mass Spectrometry.

Kaushal P, Ummadi MR, Jang GM, Delgado Y, Makanani SK, Blanc SF, Winters DM, Xu J, Polacco B, Zhou Y, Stevenson E, Eckhardt M, Zuliani-Alvarez L, Kaake R, Swaney DL, Krogan N, Bouhaddou M. Kaushal P, et al. Among authors: kaake r. ArXiv [Preprint]. 2024 May 15:arXiv:2405.09699v1. ArXiv. 2024. Update in: STAR Protoc. 2024 Nov 2;5(4):103286. doi: 10.1016/j.xpro.2024.103286. PMID: 38800652 Free PMC article. Updated. Preprint.

2

Oxidative stress-mediated regulation of proteasome complexes.

Aiken CT, Kaake RM, Wang X, Huang L. Aiken CT, et al. Mol Cell Proteomics. 2011 May;10(5):R110.006924. doi: 10.1074/mcp.M110.006924. Mol Cell Proteomics. 2011. PMID: 21543789 Free PMC article. Review.

3

Signal-induced disassembly of the SCF ubiquitin ligase complex by Cdc48/p97.

Yen JL, Flick K, Papagiannis CV, Mathur R, Tyrrell A, Ouni I, Kaake RM, Huang L, Kaiser P. Yen JL, et al. Among authors: kaake rm. Mol Cell. 2012 Oct 26;48(2):288-97. doi: 10.1016/j.molcel.2012.08.015. Epub 2012 Sep 20. Mol Cell. 2012. PMID: 23000173 Free PMC article.

4

Synthesis of two new enrichable and MS-cleavable cross-linkers to define protein-protein interactions by mass spectrometry.

Burke AM, Kandur W, Novitsky EJ, Kaake RM, Yu C, Kao A, Vellucci D, Huang L, Rychnovsky SD. Burke AM, et al. Org Biomol Chem. 2015 May 7;13(17):5030-7. doi: 10.1039/c5ob00488h. Org Biomol Chem. 2015. PMID: 25823605 Free PMC article.

5

RNA binding and core complexes constitute the U-insertion/deletion editosome.

Aphasizheva I, Zhang L, Wang X, Kaake RM, Huang L, Monti S, Aphasizhev R. Aphasizheva I, et al. Among authors: kaake rm. Mol Cell Biol. 2014 Dec 1;34(23):4329-42. doi: 10.1128/MCB.01075-14. Epub 2014 Sep 15. Mol Cell Biol. 2014. PMID: 25225332 Free PMC article.

6

Characterizing the dynamics of proteasome complexes by proteomics approaches.

Kaake RM, Kao A, Yu C, Huang L. Kaake RM, et al. Antioxid Redox Signal. 2014 Dec 10;21(17):2444-56. doi: 10.1089/ars.2013.5815. Epub 2014 Mar 27. Antioxid Redox Signal. 2014. PMID: 24423446 Free PMC article. Review.

7

Computational prediction and experimental verification of new MAP kinase docking sites and substrates including Gli transcription factors.

Whisenant TC, Ho DT, Benz RW, Rogers JS, Kaake RM, Gordon EA, Huang L, Baldi P, Bardwell L. Whisenant TC, et al. PLoS Comput Biol. 2010 Aug 26;6(8):e1000908. doi: 10.1371/journal.pcbi.1000908. PLoS Comput Biol. 2010. PMID: 20865152 Free PMC article.

8

Combining docking site and phosphosite predictions to find new substrates: identification of smoothelin-like-2 (SMTNL2) as a c-Jun N-terminal kinase (JNK) substrate.

Gordon EA, Whisenant TC, Zeller M, Kaake RM, Gordon WM, Krotee P, Patel V, Huang L, Baldi P, Bardwell L. Gordon EA, et al. Cell Signal. 2013 Dec;25(12):2518-29. doi: 10.1016/j.cellsig.2013.08.004. Epub 2013 Aug 24. Cell Signal. 2013. PMID: 23981301 Free PMC article.

9

Ty3 Retrotransposon Hijacks Mating Yeast RNA Processing Bodies to Infect New Genomes.

Bilanchone V, Clemens K, Kaake R, Dawson AR, Matheos D, Nagashima K, Sitlani P, Patterson K, Chang I, Huang L, Sandmeyer S. Bilanchone V, et al. Among authors: kaake r. PLoS Genet. 2015 Sep 30;11(9):e1005528. doi: 10.1371/journal.pgen.1005528. eCollection 2015. PLoS Genet. 2015. PMID: 26421679 Free PMC article.

10

Selective enrichment and identification of azide-tagged cross-linked peptides using chemical ligation and mass spectrometry.

Vellucci D, Kao A, Kaake RM, Rychnovsky SD, Huang L. Vellucci D, et al. J Am Soc Mass Spectrom. 2010 Aug;21(8):1432-45. doi: 10.1016/j.jasms.2010.04.004. Epub 2010 Apr 24. J Am Soc Mass Spectrom. 2010. PMID: 20472459 Free PMC article.

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