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The NCBI Comparative Genome Viewer (CGV) is an interactive visualization tool for the analysis of whole-genome eukaryotic alignments.
Rangwala SH, Rudnev DV, Ananiev VV, Oh DH, Asztalos A, Benica B, Borodin EA, Bouk N, Evgeniev VI, Kodali VK, Lotov V, Mozes E, Omelchenko MV, Savkina S, Sukharnikov E, Virothaisakun J, Murphy TD, Pruitt KD, Schneider VA. Rangwala SH, et al. Among authors: ananiev vv. PLoS Biol. 2024 May 7;22(5):e3002405. doi: 10.1371/journal.pbio.3002405. eCollection 2024 May. PLoS Biol. 2024. PMID: 38713717 Free PMC article.
Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV).
Rangwala SH, Kuznetsov A, Ananiev V, Asztalos A, Borodin E, Evgeniev V, Joukov V, Lotov V, Pannu R, Rudnev D, Shkeda A, Weitz EM, Schneider VA. Rangwala SH, et al. Genome Res. 2021 Jan;31(1):159-169. doi: 10.1101/gr.266932.120. Epub 2020 Nov 25. Genome Res. 2021. PMID: 33239395 Free PMC article.
Interactive visualization of whole eukaryote genome alignments using NCBI's Comparative Genome Viewer (CGV).
Rangwala SH, Rudnev DV, Ananiev VV, Asztalos A, Benica B, Borodin EA, Bouk N, Evgeniev VI, Kodali VK, Lotov V, Mozes E, Oh DH, Omelchenko MV, Savkina S, Sukharnikov E, Virothaisakun J, Murphy TD, Pruitt KD, Schneider VA. Rangwala SH, et al. Among authors: ananiev vv. bioRxiv [Preprint]. 2023 Nov 29:2023.10.30.564672. doi: 10.1101/2023.10.30.564672. bioRxiv. 2023. Update in: PLoS Biol. 2024 May 7;22(5):e3002405. doi: 10.1371/journal.pbio.3002405 PMID: 38077029 Free PMC article. Updated. Preprint.
Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences.
Colonna V, Ayub Q, Chen Y, Pagani L, Luisi P, Pybus M, Garrison E, Xue Y, Tyler-Smith C; 1000 Genomes Project Consortium; Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA. Colonna V, et al. Genome Biol. 2014 Jun 30;15(6):R88. doi: 10.1186/gb-2014-15-6-r88. Genome Biol. 2014. PMID: 24980144 Free PMC article.
Integrative annotation of variants from 1092 humans: application to cancer genomics.
Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, Lappalainen T, Sboner A, Lochovsky L, Chen J, Harmanci A, Das J, Abyzov A, Balasubramanian S, Beal K, Chakravarty D, Challis D, Chen Y, Clarke D, Clarke L, Cunningham F, Evani US, Flicek P, Fragoza R, Garrison E, Gibbs R, Gümüş ZH, Herrero J, Kitabayashi N, Kong Y, Lage K, Liluashvili V, Lipkin SM, MacArthur DG, Marth G, Muzny D, Pers TH, Ritchie GRS, Rosenfeld JA, Sisu C, Wei X, Wilson M, Xue Y, Yu F; 1000 Genomes Project Consortium; Dermitzakis ET, Yu H, Rubin MA, Tyler-Smith C, Gerstein M. Khurana E, et al. Science. 2013 Oct 4;342(6154):1235587. doi: 10.1126/science.1235587. Science. 2013. PMID: 24092746 Free PMC article.
An integrated map of genetic variation from 1,092 human genomes.
1000 Genomes Project Consortium; Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA. 1000 Genomes Project Consortium, et al. Nature. 2012 Nov 1;491(7422):56-65. doi: 10.1038/nature11632. Nature. 2012. PMID: 23128226 Free PMC article.
A global reference for human genetic variation.
1000 Genomes Project Consortium; Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO, Marchini JL, McCarthy S, McVean GA, Abecasis GR. 1000 Genomes Project Consortium, et al. Nature. 2015 Oct 1;526(7571):68-74. doi: 10.1038/nature15393. Nature. 2015. PMID: 26432245 Free PMC article.