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Metagenomic Analysis for Diagnosis of Hemorrhagic Fever in Minas Gerais, Brazil.
Iani FCM, de Campos GM, Adelino TER, da Silva AS, Kashima S, Alcantara LCJ, Sampaio SC, Giovanetti M, Elias MC, Slavov SN. Iani FCM, et al. Among authors: alcantara lcj. Microorganisms. 2024 Apr 11;12(4):769. doi: 10.3390/microorganisms12040769. Microorganisms. 2024. PMID: 38674713 Free PMC article.
Globin haplotypes of human T-cell lymphotropic virus type I-infected individuals in Salvador, Bahia, Brazil, suggest a post-Columbian African origin of this virus.
Alcantara LC Jr, Van Dooren S, Gonçalves MS, Kashima S, Costa MC, Santos FL, Bittencourt AL, Dourado I, Filho AA, Covas DT, Vandamme AM, Galvão-Castro B. Alcantara LC Jr, et al. J Acquir Immune Defic Syndr. 2003 Aug 1;33(4):536-42. doi: 10.1097/00126334-200308010-00016. J Acquir Immune Defic Syndr. 2003. PMID: 12869844
Deep Sequencing Analysis of Human T Cell Lymphotropic Virus Type 1 Long Terminal Repeat 5' Region from Patients with Tropical Spastic Paraparesis/Human T Cell Lymphotropic Virus Type 1-Associated Myelopathy and Asymptomatic Carriers.
Rego FF, de Oliveira T, Giovanetti M, Galvão-Castro B, Gonçalves Mde S, Alcantara LC. Rego FF, et al. AIDS Res Hum Retroviruses. 2016 Mar;32(3):279-83. doi: 10.1089/AID.2015.0273. Epub 2015 Nov 10. AIDS Res Hum Retroviruses. 2016. PMID: 26472535
Zika virus complete genome from Salvador, Bahia, Brazil.
Giovanetti M, Faria NR, Nunes MRT, de Vasconcelos JM, Lourenço J, Rodrigues SG, Vianez JL Jr, da Silva SP, Lemos PS, Tavares FN, Martin DP, do Rosário MS, Siqueira IC, Ciccozzi M, Pybus OG, de Oliveira T, Alcantara LC Junior. Giovanetti M, et al. Infect Genet Evol. 2016 Jul;41:142-145. doi: 10.1016/j.meegid.2016.03.030. Epub 2016 Apr 9. Infect Genet Evol. 2016. PMID: 27071531
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.
Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR, Lewis-Ximenez LL, de Jesus JG, Giovanetti M, Hill SC, Black A, Bedford T, Carroll MW, Nunes M, Alcantara LC Jr, Sabino EC, Baylis SA, Faria NR, Loose M, Simpson JT, Pybus OG, Andersen KG, Loman NJ. Quick J, et al. Nat Protoc. 2017 Jun;12(6):1261-1276. doi: 10.1038/nprot.2017.066. Epub 2017 May 24. Nat Protoc. 2017. PMID: 28538739 Free PMC article.
Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes.
Cleemput S, Dumon W, Fonseca V, Karim WA, Giovanetti M, Alcantara LC, Deforche K, de Oliveira T. Cleemput S, et al. bioRxiv [Preprint]. 2020 Feb 2:2020.01.31.928796. doi: 10.1101/2020.01.31.928796. bioRxiv. 2020. Update in: Bioinformatics. 2020 Jun 1;36(11):3552-3555. doi: 10.1093/bioinformatics/btaa145. PMID: 32511309 Free PMC article. Updated. Preprint.
Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic.
Pillay S, Giandhari J, Tegally H, Wilkinson E, Chimukangara B, Lessells R, Moosa Y, Mattison S, Gazy I, Fish M, Singh L, Khanyile KS, San JE, Fonseca V, Giovanetti M, Alcantara LC Jr, de Oliveira T. Pillay S, et al. Genes (Basel). 2020 Aug 17;11(8):949. doi: 10.3390/genes11080949. Genes (Basel). 2020. PMID: 32824573 Free PMC article.
181 results