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IMPROVE: a feature model to predict neoepitope immunogenicity through broad-scale validation of T-cell recognition.
Front Immunol. 2024 Apr 3;15:1360281. doi: 10.3389/fimmu.2024.1360281. eCollection 2024.
Front Immunol. 2024.
PMID: 38633261
Free PMC article.
A Computational Pipeline for Predicting Cancer Neoepitopes.
Schaap-Johansen AL, Marcatili P.
Schaap-Johansen AL, et al.
Methods Mol Biol. 2023;2552:475-488. doi: 10.1007/978-1-0716-2609-2_27.
Methods Mol Biol. 2023.
PMID: 36346610
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The Protein-Templated Synthesis of Enzyme-Generated Aptamers.
Vacacela J, Schaap-Johansen AL, Manikova P, Marcatili P, Prado M, Sun Y, Ashley J.
Vacacela J, et al. Among authors: schaap johansen al.
Angew Chem Int Ed Engl. 2022 Apr 19;61(17):e202201061. doi: 10.1002/anie.202201061. Epub 2022 Mar 4.
Angew Chem Int Ed Engl. 2022.
PMID: 35167174
Free PMC article.
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T Cell Epitope Prediction and Its Application to Immunotherapy.
Schaap-Johansen AL, Vujović M, Borch A, Hadrup SR, Marcatili P.
Schaap-Johansen AL, et al.
Front Immunol. 2021 Sep 15;12:712488. doi: 10.3389/fimmu.2021.712488. eCollection 2021.
Front Immunol. 2021.
PMID: 34603286
Free PMC article.
Review.
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Terminal deoxynucleotidyl transferase-mediated formation of protein binding polynucleotides.
Ashley J, Schaap-Johansen AL, Mohammadniaei M, Naseri M, Marcatili P, Prado M, Sun Y.
Ashley J, et al. Among authors: schaap johansen al.
Nucleic Acids Res. 2021 Jan 25;49(2):1065-1074. doi: 10.1093/nar/gkaa1263.
Nucleic Acids Res. 2021.
PMID: 33398328
Free PMC article.
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T cell receptor sequence clustering and antigen specificity.
Vujovic M, Degn KF, Marin FI, Schaap-Johansen AL, Chain B, Andresen TL, Kaplinsky J, Marcatili P.
Vujovic M, et al. Among authors: schaap johansen al.
Comput Struct Biotechnol J. 2020 Aug 5;18:2166-2173. doi: 10.1016/j.csbj.2020.06.041. eCollection 2020.
Comput Struct Biotechnol J. 2020.
PMID: 32952933
Free PMC article.
Review.
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