Depledge DP - Search Results

1

Nanopore Guided Annotation of Transcriptome Architectures.

Abebe JS, Alwie Y, Fuhrmann E, Leins J, Mai J, Verstraten R, Schreiner S, Wilson AC, Depledge DP. Abebe JS, et al. Among authors: depledge dp. bioRxiv [Preprint]. 2024 Apr 3:2024.04.02.587744. doi: 10.1101/2024.04.02.587744. bioRxiv. 2024. Update in: mSystems. 2024 Jul 23;9(7):e0050524. doi: 10.1128/msystems.00505-24. PMID: 38617228 Free PMC article. Updated. Preprint.

2

Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes.

Depledge DP, Mohr I, Wilson AC. Depledge DP, et al. J Virol. 2018 Dec 10;93(1):e01342-18. doi: 10.1128/JVI.01342-18. Print 2019 Jan 1. J Virol. 2018. PMID: 30305358 Free PMC article. Review.

3

Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen.

Depledge DP, Srinivas KP, Sadaoka T, Bready D, Mori Y, Placantonakis DG, Mohr I, Wilson AC. Depledge DP, et al. Nat Commun. 2019 Feb 14;10(1):754. doi: 10.1038/s41467-019-08734-9. Nat Commun. 2019. PMID: 30765700 Free PMC article.

4

Using Direct RNA Nanopore Sequencing to Deconvolute Viral Transcriptomes.

Depledge DP, Wilson AC. Depledge DP, et al. Curr Protoc Microbiol. 2020 Jun;57(1):e99. doi: 10.1002/cpmc.99. Curr Protoc Microbiol. 2020. PMID: 32255550 Free PMC article.

5

Direct RNA sequencing reveals m⁶A modifications on adenovirus RNA are necessary for efficient splicing.

Price AM, Hayer KE, McIntyre ABR, Gokhale NS, Abebe JS, Della Fera AN, Mason CE, Horner SM, Wilson AC, Depledge DP, Weitzman MD. Price AM, et al. Among authors: depledge dp. Nat Commun. 2020 Nov 26;11(1):6016. doi: 10.1038/s41467-020-19787-6. Nat Commun. 2020. PMID: 33243990 Free PMC article.

6

Targeting the m⁶A RNA modification pathway blocks SARS-CoV-2 and HCoV-OC43 replication.

Burgess HM, Depledge DP, Thompson L, Srinivas KP, Grande RC, Vink EI, Abebe JS, Blackaby WP, Hendrick A, Albertella MR, Kouzarides T, Stapleford KA, Wilson AC, Mohr I. Burgess HM, et al. Among authors: depledge dp. Genes Dev. 2021 Jul 1;35(13-14):1005-1019. doi: 10.1101/gad.348320.121. Epub 2021 Jun 24. Genes Dev. 2021. PMID: 34168039 Free PMC article.

7

Widespread remodeling of the m⁶A RNA-modification landscape by a viral regulator of RNA processing and export.

Srinivas KP, Depledge DP, Abebe JS, Rice SA, Mohr I, Wilson AC. Srinivas KP, et al. Among authors: depledge dp. Proc Natl Acad Sci U S A. 2021 Jul 27;118(30):e2104805118. doi: 10.1073/pnas.2104805118. Proc Natl Acad Sci U S A. 2021. PMID: 34282019 Free PMC article.

8

DRUMMER-rapid detection of RNA modifications through comparative nanopore sequencing.

Abebe JS, Price AM, Hayer KE, Mohr I, Weitzman MD, Wilson AC, Depledge DP. Abebe JS, et al. Among authors: depledge dp. Bioinformatics. 2022 May 26;38(11):3113-3115. doi: 10.1093/bioinformatics/btac274. Bioinformatics. 2022. PMID: 35426900 Free PMC article.

9

Nanopore-Based Detection of Viral RNA Modifications.

Abebe JS, Verstraten R, Depledge DP. Abebe JS, et al. Among authors: depledge dp. mBio. 2022 Jun 28;13(3):e0370221. doi: 10.1128/mbio.03702-21. Epub 2022 May 17. mBio. 2022. PMID: 35579392 Free PMC article. Review.

10

Reply to Wang et al., "Ample evidence for the presence of HSV-1 LAT in non-neuronal ganglionic cells of mice and humans".

Ouwendijk WJD, Roychoudhury P, Cunningham AL, Jerome KR, Koelle DM, Kinchington PR, Mohr I, Wilson AC, Verjans GMGM, Depledge DP. Ouwendijk WJD, et al. Among authors: depledge dp. J Virol. 2024 Jun 13;98(6):e0052024. doi: 10.1128/jvi.00520-24. Epub 2024 May 3. J Virol. 2024. PMID: 38700354 Free PMC article. No abstract available.

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