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WormBase 2024: status and transitioning to Alliance infrastructure.
Sternberg PW, Van Auken K, Wang Q, Wright A, Yook K, Zarowiecki M, Arnaboldi V, Becerra A, Brown S, Cain S, Chan J, Chen WJ, Cho J, Davis P, Diamantakis S, Dyer S, Grigoriadis D, Grove CA, Harris T, Howe K, Kishore R, Lee R, Longden I, Luypaert M, Müller HM, Nuin P, Quinton-Tulloch M, Raciti D, Schedl T, Schindelman G, Stein L. Sternberg PW, et al. Among authors: wang q. Genetics. 2024 May 7;227(1):iyae050. doi: 10.1093/genetics/iyae050. Genetics. 2024. PMID: 38573366 Free PMC article.
WormBase 2017: molting into a new stage.
Lee RYN, Howe KL, Harris TW, Arnaboldi V, Cain S, Chan J, Chen WJ, Davis P, Gao S, Grove C, Kishore R, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Rodgers F, Russell M, Schindelman G, Tuli MA, Van Auken K, Wang Q, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW. Lee RYN, et al. Among authors: wang q. Nucleic Acids Res. 2018 Jan 4;46(D1):D869-D874. doi: 10.1093/nar/gkx998. Nucleic Acids Res. 2018. PMID: 29069413 Free PMC article.
WormBase: a modern Model Organism Information Resource.
Harris TW, Arnaboldi V, Cain S, Chan J, Chen WJ, Cho J, Davis P, Gao S, Grove CA, Kishore R, Lee RYN, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Rodgers FH, Russell M, Schindelman G, Auken KV, Wang Q, Williams G, Wright AJ, Yook K, Howe KL, Schedl T, Stein L, Sternberg PW. Harris TW, et al. Among authors: wang q. Nucleic Acids Res. 2020 Jan 8;48(D1):D762-D767. doi: 10.1093/nar/gkz920. Nucleic Acids Res. 2020. PMID: 31642470 Free PMC article.
WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans.
Davis P, Zarowiecki M, Arnaboldi V, Becerra A, Cain S, Chan J, Chen WJ, Cho J, da Veiga Beltrame E, Diamantakis S, Gao S, Grigoriadis D, Grove CA, Harris TW, Kishore R, Le T, Lee RYN, Luypaert M, Müller HM, Nakamura C, Nuin P, Paulini M, Quinton-Tulloch M, Raciti D, Rodgers FH, Russell M, Schindelman G, Singh A, Stickland T, Van Auken K, Wang Q, Williams G, Wright AJ, Yook K, Berriman M, Howe KL, Schedl T, Stein L, Sternberg PW. Davis P, et al. Among authors: wang q. Genetics. 2022 Apr 4;220(4):iyac003. doi: 10.1093/genetics/iyac003. Genetics. 2022. PMID: 35134929 Free PMC article.
WormBase: a multi-species resource for nematode biology and genomics.
Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD. Harris TW, et al. Among authors: wang q. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D411-7. doi: 10.1093/nar/gkh066. Nucleic Acids Res. 2004. PMID: 14681445 Free PMC article.
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.
Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Canaran P, Chan J, Chen CK, Chen WJ, Cunningham F, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Pai S, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD. Chen N, et al. Among authors: wang q. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D383-9. doi: 10.1093/nar/gki066. Nucleic Acids Res. 2005. PMID: 15608221 Free PMC article.
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
MacDougall A, Volynkin V, Saidi R, Poggioli D, Zellner H, Hatton-Ellis E, Joshi V, O'Donovan C, Orchard S, Auchincloss AH, Baratin D, Bolleman J, Coudert E, de Castro E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Arighi C, Wang Q, Chen C, Huang H, Garavelli J, Vinayaka CR, Yeh LS, Natale DA, Laiho K, Martin MJ, Renaux A, Pichler K; UniProt Consortium. MacDougall A, et al. Among authors: wang q. Bioinformatics. 2020 Nov 1;36(17):4643-4648. doi: 10.1093/bioinformatics/btaa485. Bioinformatics. 2020. PMID: 32399560 Free PMC article.
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