Cook DE - Search Results

1

Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen.

Torres DE, Kramer HM, Tracanna V, Fiorin GL, Cook DE, Seidl MF, Thomma BPHJ. Torres DE, et al. Among authors: cook de. Nat Commun. 2024 Feb 24;15(1):1701. doi: 10.1038/s41467-024-45884-x. Nat Commun. 2024. PMID: 38402218 Free PMC article.

2

Understanding plant immunity as a surveillance system to detect invasion.

Cook DE, Mesarich CH, Thomma BP. Cook DE, et al. Annu Rev Phytopathol. 2015;53:541-63. doi: 10.1146/annurev-phyto-080614-120114. Epub 2015 Jun 6. Annu Rev Phytopathol. 2015. PMID: 26047564 Review.

3

Mind the gap; seven reasons to close fragmented genome assemblies.

Thomma BPHJ, Seidl MF, Shi-Kunne X, Cook DE, Bolton MD, van Kan JAL, Faino L. Thomma BPHJ, et al. Among authors: cook de. Fungal Genet Biol. 2016 May;90:24-30. doi: 10.1016/j.fgb.2015.08.010. Epub 2015 Sep 2. Fungal Genet Biol. 2016. PMID: 26342853 Review.

4

Chromatin Biology Impacts Adaptive Evolution of Filamentous Plant Pathogens.

Seidl MF, Cook DE, Thomma BP. Seidl MF, et al. Among authors: cook de. PLoS Pathog. 2016 Nov 3;12(11):e1005920. doi: 10.1371/journal.ppat.1005920. eCollection 2016 Nov. PLoS Pathog. 2016. PMID: 27812218 Free PMC article. Review. No abstract available.

5

Metabolomics of tomato xylem sap during bacterial wilt reveals Ralstonia solanacearum produces abundant putrescine, a metabolite that accelerates wilt disease.

Lowe-Power TM, Hendrich CG, von Roepenack-Lahaye E, Li B, Wu D, Mitra R, Dalsing BL, Ricca P, Naidoo J, Cook D, Jancewicz A, Masson P, Thomma B, Lahaye T, Michael AJ, Allen C. Lowe-Power TM, et al. Environ Microbiol. 2018 Apr;20(4):1330-1349. doi: 10.1111/1462-2920.14020. Epub 2017 Dec 22. Environ Microbiol. 2018. PMID: 29215193 Free PMC article.

6

Targeting microbial pathogens.

Thomma BPHJ, Cook DE. Thomma BPHJ, et al. Among authors: cook de. Science. 2018 Jun 8;360(6393):1070-1071. doi: 10.1126/science.aat9343. Science. 2018. PMID: 29880672 No abstract available.

7

Long-Read Annotation: Automated Eukaryotic Genome Annotation Based on Long-Read cDNA Sequencing.

Cook DE, Valle-Inclan JE, Pajoro A, Rovenich H, Thomma BPHJ, Faino L. Cook DE, et al. Plant Physiol. 2019 Jan;179(1):38-54. doi: 10.1104/pp.18.00848. Epub 2018 Nov 6. Plant Physiol. 2019. PMID: 30401722 Free PMC article.

8

Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus Verticillium.

Seidl MF, Kramer HM, Cook DE, Fiorin GL, van den Berg GCM, Faino L, Thomma BPHJ. Seidl MF, et al. Among authors: cook de. mBio. 2020 Sep 8;11(5):e01714-20. doi: 10.1128/mBio.01714-20. mBio. 2020. PMID: 32900804 Free PMC article.

9

A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen.

Cook DE, Kramer HM, Torres DE, Seidl MF, Thomma BPHJ. Cook DE, et al. Elife. 2020 Dec 18;9:e62208. doi: 10.7554/eLife.62208. Elife. 2020. PMID: 33337321 Free PMC article.

10

Three putative DNA methyltransferases of Verticillium dahliae differentially contribute to DNA methylation that is dispensable for growth, development and virulence.

Kramer HM, Cook DE, van den Berg GCM, Seidl MF, Thomma BPHJ. Kramer HM, et al. Among authors: cook de. Epigenetics Chromatin. 2021 May 3;14(1):21. doi: 10.1186/s13072-021-00396-6. Epigenetics Chromatin. 2021. PMID: 33941240 Free PMC article.

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