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OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data.
Pfeuffer J, Bielow C, Wein S, Jeong K, Netz E, Walter A, Alka O, Nilse L, Colaianni PD, McCloskey D, Kim J, Rosenberger G, Bichmann L, Walzer M, Veit J, Boudaud B, Bernt M, Patikas N, Pilz M, Startek MP, Kutuzova S, Heumos L, Charkow J, Sing JC, Feroz A, Siraj A, Weisser H, Dijkstra TMH, Perez-Riverol Y, Röst H, Kohlbacher O, Sachsenberg T. Pfeuffer J, et al. Among authors: kutuzova s. Nat Methods. 2024 Mar;21(3):365-367. doi: 10.1038/s41592-024-02197-7. Nat Methods. 2024. PMID: 38366242 No abstract available.
Adversarial and variational autoencoders improve metagenomic binning.
Líndez PP, Johansen J, Kutuzova S, Sigurdsson AI, Nissen JN, Rasmussen S. Líndez PP, et al. Among authors: kutuzova s. Commun Biol. 2023 Oct 21;6(1):1073. doi: 10.1038/s42003-023-05452-3. Commun Biol. 2023. PMID: 37865678 Free PMC article.
Machine learning and deep learning applications in microbiome research.
Hernández Medina R, Kutuzova S, Nielsen KN, Johansen J, Hansen LH, Nielsen M, Rasmussen S. Hernández Medina R, et al. Among authors: kutuzova s. ISME Commun. 2022 Oct 6;2(1):98. doi: 10.1038/s43705-022-00182-9. ISME Commun. 2022. PMID: 37938690 Free PMC article. Review.
Icosapent Ethyl Reduces Ischemic Events in Patients With a History of Previous Coronary Artery Bypass Grafting: REDUCE-IT CABG.
Verma S, Bhatt DL, Steg PG, Miller M, Brinton EA, Jacobson TA, Dhingra NK, Ketchum SB, Juliano RA, Jiao L, Doyle RT Jr, Granowitz C, Gibson CM, Pinto D, Giugliano RP, Budoff MJ, Mason RP, Tardif JC, Ballantyne CM; REDUCE-IT Investigators. Verma S, et al. Circulation. 2021 Dec 7;144(23):1845-1855. doi: 10.1161/CIRCULATIONAHA.121.056290. Epub 2021 Oct 28. Circulation. 2021. PMID: 34710343 Free article. Clinical Trial.
SmartPeak Automates Targeted and Quantitative Metabolomics Data Processing.
Kutuzova S, Colaianni P, Röst H, Sachsenberg T, Alka O, Kohlbacher O, Burla B, Torta F, Schrübbers L, Kristensen M, Nielsen L, Herrgård MJ, McCloskey D. Kutuzova S, et al. Anal Chem. 2020 Dec 15;92(24):15968-15974. doi: 10.1021/acs.analchem.0c03421. Epub 2020 Dec 3. Anal Chem. 2020. PMID: 33269929
14 results