Huerta-Cepas J - Search Results

1

Functional and evolutionary significance of unknown genes from uncultivated taxa.

Rodríguez Del Río Á, Giner-Lamia J, Cantalapiedra CP, Botas J, Deng Z, Hernández-Plaza A, Munar-Palmer M, Santamaría-Hernando S, Rodríguez-Herva JJ, Ruscheweyh HJ, Paoli L, Schmidt TSB, Sunagawa S, Bork P, López-Solanilla E, Coelho LP, Huerta-Cepas J. Rodríguez Del Río Á, et al. Among authors: huerta cepas j. Nature. 2024 Feb;626(7998):377-384. doi: 10.1038/s41586-023-06955-z. Epub 2023 Dec 18. Nature. 2024. PMID: 38109938 Free PMC article.

2

A Critical Review on the Use of Support Values in Tree Viewers and Bioinformatics Toolkits.

Czech L, Huerta-Cepas J, Stamatakis A. Czech L, et al. Mol Biol Evol. 2017 Jun 1;34(6):1535-1542. doi: 10.1093/molbev/msx055. Mol Biol Evol. 2017. PMID: 28369572 Free PMC article.

3

Comparative transcriptomics of early dipteran development.

Jiménez-Guri E, Huerta-Cepas J, Cozzuto L, Wotton KR, Kang H, Himmelbauer H, Roma G, Gabaldón T, Jaeger J. Jiménez-Guri E, et al. BMC Genomics. 2013 Feb 24;14:123. doi: 10.1186/1471-2164-14-123. BMC Genomics. 2013. PMID: 23432914 Free PMC article.

4

Neuroprotection elicited by P2Y13 receptors against genotoxic stress by inducing DUSP2 expression and MAPK signaling recovery.

Morente V, Pérez-Sen R, Ortega F, Huerta-Cepas J, Delicado EG, Miras-Portugal MT. Morente V, et al. Biochim Biophys Acta. 2014 Sep;1843(9):1886-98. doi: 10.1016/j.bbamcr.2014.05.004. Epub 2014 May 20. Biochim Biophys Acta. 2014. PMID: 24851838 Free article.

5

PhylomeDB: a database for genome-wide collections of gene phylogenies.

Huerta-Cepas J, Bueno A, Dopazo J, Gabaldón T. Huerta-Cepas J, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D491-6. doi: 10.1093/nar/gkm899. Epub 2007 Oct 25. Nucleic Acids Res. 2008. PMID: 17962297 Free PMC article.

6

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.

Huerta-Cepas J, Capella-Gutiérrez S, Pryszcz LP, Marcet-Houben M, Gabaldón T. Huerta-Cepas J, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D897-902. doi: 10.1093/nar/gkt1177. Epub 2013 Nov 25. Nucleic Acids Res. 2014. PMID: 24275491 Free PMC article.

7

Ten Years of Collaborative Progress in the Quest for Orthologs.

Linard B, Ebersberger I, McGlynn SE, Glover N, Mochizuki T, Patricio M, Lecompte O, Nevers Y, Thomas PD, Gabaldón T, Sonnhammer E, Dessimoz C, Uchiyama I; QFO Consortium. Linard B, et al. Mol Biol Evol. 2021 Jul 29;38(8):3033-3045. doi: 10.1093/molbev/msab098. Mol Biol Evol. 2021. PMID: 33822172 Free PMC article.

8

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.

Sánchez R, Serra F, Tárraga J, Medina I, Carbonell J, Pulido L, de María A, Capella-Gutíerrez S, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H. Sánchez R, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W470-4. doi: 10.1093/nar/gkr408. Epub 2011 Jun 6. Nucleic Acids Res. 2011. PMID: 21646336 Free PMC article.

9

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins.

Minguez P, Letunic I, Parca L, Garcia-Alonso L, Dopazo J, Huerta-Cepas J, Bork P. Minguez P, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D494-502. doi: 10.1093/nar/gku1081. Epub 2014 Oct 31. Nucleic Acids Res. 2015. PMID: 25361965 Free PMC article.

10

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.

Huerta-Cepas J, Szklarczyk D, Forslund K, Cook H, Heller D, Walter MC, Rattei T, Mende DR, Sunagawa S, Kuhn M, Jensen LJ, von Mering C, Bork P. Huerta-Cepas J, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D286-93. doi: 10.1093/nar/gkv1248. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26582926 Free PMC article.

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