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SPIRE: a Searchable, Planetary-scale mIcrobiome REsource.
Schmidt TSB, Fullam A, Ferretti P, Orakov A, Maistrenko OM, Ruscheweyh HJ, Letunic I, Duan Y, Van Rossum T, Sunagawa S, Mende DR, Finn RD, Kuhn M, Pedro Coelho L, Bork P. Schmidt TSB, et al. Among authors: duan y. Nucleic Acids Res. 2024 Jan 5;52(D1):D777-D783. doi: 10.1093/nar/gkad943. Nucleic Acids Res. 2024. PMID: 37897342 Free PMC article.
Computational exploration of the global microbiome for antibiotic discovery.
Santos-Júnior CD, Der Torossian Torres M, Duan Y, Del Río ÁR, Schmidt TSB, Chong H, Fullam A, Kuhn M, Zhu C, Houseman A, Somborski J, Vines A, Zhao XM, Bork P, Huerta-Cepas J, de la Fuente-Nunez C, Coelho LP. Santos-Júnior CD, et al. Among authors: duan y. bioRxiv [Preprint]. 2023 Sep 11:2023.08.31.555663. doi: 10.1101/2023.08.31.555663. bioRxiv. 2023. Update in: Cell. 2024 Jul 11;187(14):3761-3778.e16. doi: 10.1016/j.cell.2024.05.013. PMID: 37693522 Free PMC article. Updated. Preprint.
Discovery of antimicrobial peptides in the global microbiome with machine learning.
Santos-Júnior CD, Torres MDT, Duan Y, Rodríguez Del Río Á, Schmidt TSB, Chong H, Fullam A, Kuhn M, Zhu C, Houseman A, Somborski J, Vines A, Zhao XM, Bork P, Huerta-Cepas J, de la Fuente-Nunez C, Coelho LP. Santos-Júnior CD, et al. Among authors: duan y. Cell. 2024 Jul 11;187(14):3761-3778.e16. doi: 10.1016/j.cell.2024.05.013. Epub 2024 Jun 5. Cell. 2024. PMID: 38843834 Free article.
A catalog of small proteins from the global microbiome.
Duan Y, Santos-Júnior CD, Schmidt TS, Fullam A, de Almeida BLS, Zhu C, Kuhn M, Zhao XM, Bork P, Coelho LP. Duan Y, et al. Nat Commun. 2024 Aug 31;15(1):7563. doi: 10.1038/s41467-024-51894-6. Nat Commun. 2024. PMID: 39214983 Free PMC article.
The microbiome of the buffalo digestive tract.
Tong F, Wang T, Gao NL, Liu Z, Cui K, Duan Y, Wu S, Luo Y, Li Z, Yang C, Xu Y, Lin B, Yang L, Pauciullo A, Shi D, Hua G, Chen WH, Liu Q. Tong F, et al. Among authors: duan y. Nat Commun. 2022 Feb 10;13(1):823. doi: 10.1038/s41467-022-28402-9. Nat Commun. 2022. PMID: 35145088 Free PMC article.
8,480 results