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Page 1
A how-to guide for code sharing in biology.
Abdill RJ, Talarico E, Grieneisen L. Abdill RJ, et al. PLoS Biol. 2024 Sep 10;22(9):e3002815. doi: 10.1371/journal.pbio.3002815. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39255324 Free PMC article. Review.
Packaging and containerization of computational methods.
Alser M, Lawlor B, Abdill RJ, Waymost S, Ayyala R, Rajkumar N, LaPierre N, Brito J, Ribeiro-Dos-Santos AM, Almadhoun N, Sarwal V, Firtina C, Osinski T, Eskin E, Hu Q, Strong D, Kim BBD, Abedalthagafi MS, Mutlu O, Mangul S. Alser M, et al. Among authors: abdill rj. Nat Protoc. 2024 Sep;19(9):2529-2539. doi: 10.1038/s41596-024-00986-0. Epub 2024 Apr 2. Nat Protoc. 2024. PMID: 38565959 Review.
High-throughput Oligopaint screen identifies druggable 3D genome regulators.
Park DS, Nguyen SC, Isenhart R, Shah PP, Kim W, Barnett RJ, Chandra A, Luppino JM, Harke J, Wai M, Walsh PJ, Abdill RJ, Yang R, Lan Y, Yoon S, Yunker R, Kanemaki MT, Vahedi G, Phillips-Cremins JE, Jain R, Joyce EF. Park DS, et al. Among authors: abdill rj. Nature. 2023 Aug;620(7972):209-217. doi: 10.1038/s41586-023-06340-w. Epub 2023 Jul 12. Nature. 2023. PMID: 37438531 Free PMC article.
An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype.
Shah PP, Keough KC, Gjoni K, Santini GT, Abdill RJ, Wickramasinghe NM, Dundes CE, Karnay A, Chen A, Salomon REA, Walsh PJ, Nguyen SC, Whalen S, Joyce EF, Loh KM, Dubois N, Pollard KS, Jain R. Shah PP, et al. Among authors: abdill rj. Genome Biol. 2023 Jan 23;24(1):16. doi: 10.1186/s13059-023-02849-5. Genome Biol. 2023. PMID: 36691074 Free PMC article.
BiomeHorizon: Visualizing Microbiome Time Series Data in R.
Fink I, Abdill RJ, Blekhman R, Grieneisen L. Fink I, et al. Among authors: abdill rj. mSystems. 2022 Jun 28;7(3):e0138021. doi: 10.1128/msystems.01380-21. Epub 2022 May 5. mSystems. 2022. PMID: 35499306 Free PMC article.
Comparing quality of reporting between preprints and peer-reviewed articles in the biomedical literature.
Carneiro CFD, Queiroz VGS, Moulin TC, Carvalho CAM, Haas CB, Rayêe D, Henshall DE, De-Souza EA, Amorim FE, Boos FZ, Guercio GD, Costa IR, Hajdu KL, van Egmond L, Modrák M, Tan PB, Abdill RJ, Burgess SJ, Guerra SFS, Bortoluzzi VT, Amaral OB. Carneiro CFD, et al. Among authors: abdill rj. Res Integr Peer Rev. 2020 Dec 1;5(1):16. doi: 10.1186/s41073-020-00101-3. Res Integr Peer Rev. 2020. PMID: 33292815 Free PMC article.
13 results