Joy JB - Search Results

1

Community Insights in Phylogenetic HIV Research: The CIPHR Project Protocol.

Cholette F, Lazarus L, Macharia P, Thompson LH, Githaiga S, Mathenge J, Walimbwa J, Kuria I, Okoth S, Wambua S, Albert H, Mwangi P, Adhiambo J, Kasiba R, Juma E, Battacharjee P, Kimani J, Sandstrom P, Meyers AFA, Joy JB, Thomann M, McLaren PJ, Shaw S, Mishra S, Becker ML, McKinnon L, Lorway R. Cholette F, et al. Among authors: joy jb. Glob Public Health. 2023 Jan;18(1):2269435. doi: 10.1080/17441692.2023.2269435. Epub 2023 Oct 18. Glob Public Health. 2023. PMID: 37851872 Free article.

2

Extensive host immune adaptation in a concentrated North American HIV epidemic.

Brumme ZL, Kinloch NN, Sanche S, Wong A, Martin E, Cobarrubias KD, Sandstrom P, Levett PN, Harrigan PR, Joy JB. Brumme ZL, et al. Among authors: joy jb. AIDS. 2018 Sep 10;32(14):1927-1938. doi: 10.1097/QAD.0000000000001912. AIDS. 2018. PMID: 30048246 Free PMC article.

3

HIV-1 phylodynamic analysis among people who inject drugs in Pakistan correlates with trends in illicit opioid trade.

Cholette F, Joy J, Pelcat Y, Thompson LH, Pilon R, Ho J, Capina R, Archibald C, Blanchard JF, Emmanuel F, Reza T, Dar N, Harrigan R, Kim J, Sandstrom P. Cholette F, et al. PLoS One. 2020 Aug 28;15(8):e0237560. doi: 10.1371/journal.pone.0237560. eCollection 2020. PLoS One. 2020. PMID: 32857765 Free PMC article.

4

Concordance of HIV transmission risk factors elucidated using viral diversification rate and phylogenetic clustering.

McLaughlin A, Sereda P, Brumme CJ, Brumme ZL, Barrios R, Montaner JSG, Joy JB. McLaughlin A, et al. Among authors: joy jb. Evol Med Public Health. 2021 Sep 23;9(1):338-348. doi: 10.1093/emph/eoab028. eCollection 2021. Evol Med Public Health. 2021. PMID: 34754454 Free PMC article.

5

Phylogenetic prioritization of HIV-1 transmission clusters with viral lineage-level diversification rates.

Miller RL, McLaughlin A, Liang RH, Harding J, Wong J, Le AQ, Brumme CJ, Montaner JSG, Joy JB. Miller RL, et al. Among authors: joy jb. Evol Med Public Health. 2022 Jul 22;10(1):305-315. doi: 10.1093/emph/eoac026. eCollection 2022. Evol Med Public Health. 2022. PMID: 35899097 Free PMC article.

6

Impact of SARS-CoV-2 lockdown on expansion of HIV transmission clusters among key populations: A retrospective phylogenetic analysis.

Miller RL, McLaughlin A, Montoya V, Toy J, Stone S, Harding J, Liang RH, Wong J, Barrios R, Montaner JSG, Joy JB. Miller RL, et al. Among authors: joy jb. Lancet Reg Health Am. 2022 Dec;16:100369. doi: 10.1016/j.lana.2022.100369. Epub 2022 Sep 23. Lancet Reg Health Am. 2022. PMID: 36168656 Free PMC article.

7

The impact of clinical, demographic and risk factors on rates of HIV transmission: a population-based phylogenetic analysis in British Columbia, Canada.

Poon AF, Joy JB, Woods CK, Shurgold S, Colley G, Brumme CJ, Hogg RS, Montaner JS, Harrigan PR. Poon AF, et al. Among authors: joy jb. J Infect Dis. 2015 Mar 15;211(6):926-35. doi: 10.1093/infdis/jiu560. Epub 2014 Oct 13. J Infect Dis. 2015. PMID: 25312037 Free PMC article.

8

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium. Ratmann O, et al. Among authors: joy jb. Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7. Mol Biol Evol. 2017. PMID: 28053012 Free PMC article.

9

Phylogenetic surveillance of travel-related Zika virus infections through whole-genome sequencing methods.

Kamelian K, Montoya V, Olmstead A, Dong W, Harrigan R, Morshed M, Joy JB. Kamelian K, et al. Among authors: joy jb. Sci Rep. 2019 Nov 11;9(1):16433. doi: 10.1038/s41598-019-52613-8. Sci Rep. 2019. PMID: 31712570 Free PMC article.

10

Inferring Human Immunodeficiency Virus 1 Proviral Integration Dates With Bayesian Inference.

Jones BR, Joy JB. Jones BR, et al. Among authors: joy jb. Mol Biol Evol. 2023 Aug 3;40(8):msad156. doi: 10.1093/molbev/msad156. Mol Biol Evol. 2023. PMID: 37421655 Free PMC article.

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