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A comparative encyclopedia of DNA elements in the mouse genome.
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P,… See abstract for full author list ➔ Yue F, et al. Among authors: zhong s. Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992. Nature. 2014. PMID: 25409824 Free PMC article.
Mapping RNA-RNA interactome and RNA structure in vivo by MARIO.
Nguyen TC, Cao X, Yu P, Xiao S, Lu J, Biase FH, Sridhar B, Huang N, Zhang K, Zhong S. Nguyen TC, et al. Among authors: zhong s. Nat Commun. 2016 Jun 24;7:12023. doi: 10.1038/ncomms12023. Nat Commun. 2016. PMID: 27338251 Free PMC article.
Systematic Mapping of RNA-Chromatin Interactions In Vivo.
Sridhar B, Rivas-Astroza M, Nguyen TC, Chen W, Yan Z, Cao X, Hebert L, Zhong S. Sridhar B, et al. Among authors: zhong s. Curr Biol. 2017 Feb 20;27(4):602-609. doi: 10.1016/j.cub.2017.01.011. Epub 2017 Jan 26. Curr Biol. 2017. PMID: 28132817 Free PMC article.
Systematic Mapping of RNA-Chromatin Interactions In Vivo.
Sridhar B, Rivas-Astroza M, Nguyen TC, Chen W, Yan Z, Cao X, Hebert L, Zhong S. Sridhar B, et al. Among authors: zhong s. Curr Biol. 2017 Feb 20;27(4):610-612. doi: 10.1016/j.cub.2017.01.068. Curr Biol. 2017. PMID: 28222283 Free article. No abstract available.
The 4D nucleome project.
Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S; 4D Nucleome Network. Dekker J, et al. Among authors: zhong s. Nature. 2017 Sep 13;549(7671):219-226. doi: 10.1038/nature23884. Nature. 2017. PMID: 28905911 Free PMC article.
GIVE: portable genome browsers for personal websites.
Cao X, Yan Z, Wu Q, Zheng A, Zhong S. Cao X, et al. Among authors: zhong s. Genome Biol. 2018 Jul 18;19(1):92. doi: 10.1186/s13059-018-1465-6. Genome Biol. 2018. PMID: 30016975 Free PMC article.
RNA, Action through Interactions.
Nguyen TC, Zaleta-Rivera K, Huang X, Dai X, Zhong S. Nguyen TC, et al. Among authors: zhong s. Trends Genet. 2018 Nov;34(11):867-882. doi: 10.1016/j.tig.2018.08.001. Epub 2018 Aug 31. Trends Genet. 2018. PMID: 30177410 Free PMC article. Review.
4,530 results