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Page 1
Nowcasting the 2022 mpox outbreak in England.
Overton CE, Abbott S, Christie R, Cumming F, Day J, Jones O, Paton R, Turner C, Ward T. Overton CE, et al. Among authors: abbott s. PLoS Comput Biol. 2023 Sep 18;19(9):e1011463. doi: 10.1371/journal.pcbi.1011463. eCollection 2023 Sep. PLoS Comput Biol. 2023. PMID: 37721951 Free PMC article.
Collaborative nowcasting of COVID-19 hospitalization incidences in Germany.
Wolffram D, Abbott S, An der Heiden M, Funk S, Günther F, Hailer D, Heyder S, Hotz T, van de Kassteele J, Küchenhoff H, Müller-Hansen S, Syliqi D, Ullrich A, Weigert M, Schienle M, Bracher J. Wolffram D, et al. Among authors: abbott s. PLoS Comput Biol. 2023 Aug 11;19(8):e1011394. doi: 10.1371/journal.pcbi.1011394. eCollection 2023 Aug. PLoS Comput Biol. 2023. PMID: 37566642 Free PMC article.
Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic.
Sherratt K, Carnegie AC, Kucharski A, Cori A, Pearson CAB, Jarvis CI, Overton C, Weston D, Hill EM, Knock E, Fearon E, Nightingale E, Hellewell J, Edmunds WJ, Villabona Arenas J, Prem K, Pi L, Baguelin M, Kendall M, Ferguson N, Davies N, Eggo RM, van Elsland S, Russell T, Funk S, Liu Y, Abbott S. Sherratt K, et al. Among authors: abbott s. Wellcome Open Res. 2024 Jan 8;9:12. doi: 10.12688/wellcomeopenres.19601.1. eCollection 2024. Wellcome Open Res. 2024. PMID: 38784437 Free PMC article.
Best practices for estimating and reporting epidemiological delay distributions of infectious diseases.
Charniga K, Park SW, Akhmetzhanov AR, Cori A, Dushoff J, Funk S, Gostic KM, Linton NM, Lison A, Overton CE, Pulliam JRC, Ward T, Cauchemez S, Abbott S. Charniga K, et al. Among authors: abbott s. PLoS Comput Biol. 2024 Oct 28;20(10):e1012520. doi: 10.1371/journal.pcbi.1012520. eCollection 2024 Oct. PLoS Comput Biol. 2024. PMID: 39466727 Free PMC article.
Practical considerations for measuring the effective reproductive number, Rt.
Gostic KM, McGough L, Baskerville EB, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday JD, Bosse NI, Sherrat K, Thompson RN, White LF, Huisman JS, Scire J, Bonhoeffer S, Stadler T, Wallinga J, Funk S, Lipsitch M, Cobey S. Gostic KM, et al. Among authors: abbott s. PLoS Comput Biol. 2020 Dec 10;16(12):e1008409. doi: 10.1371/journal.pcbi.1008409. eCollection 2020 Dec. PLoS Comput Biol. 2020. PMID: 33301457 Free PMC article.
Comparing human and model-based forecasts of COVID-19 in Germany and Poland.
Bosse NI, Abbott S, Bracher J, Hain H, Quilty BJ, Jit M; Centre for the Mathematical Modelling of Infectious Diseases COVID-19 Working Group; van Leeuwen E, Cori A, Funk S. Bosse NI, et al. Among authors: abbott s. PLoS Comput Biol. 2022 Sep 19;18(9):e1010405. doi: 10.1371/journal.pcbi.1010405. eCollection 2022 Sep. PLoS Comput Biol. 2022. PMID: 36121848 Free PMC article.
Scoring epidemiological forecasts on transformed scales.
Bosse NI, Abbott S, Cori A, van Leeuwen E, Bracher J, Funk S. Bosse NI, et al. Among authors: abbott s. PLoS Comput Biol. 2023 Aug 29;19(8):e1011393. doi: 10.1371/journal.pcbi.1011393. eCollection 2023 Aug. PLoS Comput Biol. 2023. PMID: 37643178 Free PMC article.
Combined analyses of within-host SARS-CoV-2 viral kinetics and information on past exposures to the virus in a human cohort identifies intrinsic differences of Omicron and Delta variants.
Russell TW, Townsley H, Abbott S, Hellewell J, Carr EJ, Chapman LAC, Pung R, Quilty BJ, Hodgson D, Fowler AS, Adams L, Bailey C, Mears HV, Harvey R, Clayton B, O'Reilly N, Ngai Y, Nicod J, Gamblin S, Williams B, Gandhi S, Swanton C, Beale R, Bauer DLV, Wall EC, Kucharski AJ. Russell TW, et al. Among authors: abbott s. PLoS Biol. 2024 Jan 30;22(1):e3002463. doi: 10.1371/journal.pbio.3002463. eCollection 2024 Jan. PLoS Biol. 2024. PMID: 38289907 Free PMC article.
756 results