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Immunolyser: A web-based computational pipeline for analysing and mining immunopeptidomic data.
Munday PR, Fehring J, Revote J, Pandey K, Shahbazy M, Scull KE, Ramarathinam SH, Faridi P, Croft NP, Braun A, Li C, Purcell AW. Munday PR, et al. Among authors: ramarathinam sh. Comput Struct Biotechnol J. 2023 Feb 18;21:1678-1687. doi: 10.1016/j.csbj.2023.02.033. eCollection 2023. Comput Struct Biotechnol J. 2023. PMID: 36890882 Free PMC article.
SAPrIm, a semi-automated protocol for mid-throughput immunopeptidomics.
Lim Kam Sian TCC, Goncalves G, Steele JR, Shamekhi T, Bramberger L, Jin D, Shahbazy M, Purcell AW, Ramarathinam S, Stoychev S, Faridi P. Lim Kam Sian TCC, et al. Front Immunol. 2023 Jun 2;14:1107576. doi: 10.3389/fimmu.2023.1107576. eCollection 2023. Front Immunol. 2023. PMID: 37334365 Free PMC article.
A combined immunopeptidomics, proteomics, and cell surface proteomics approach to identify immunotherapy targets for diffuse intrinsic pontine glioma.
Pandey K, Wang SS, Mifsud NA, Faridi P, Davenport AJ, Webb AI, Sandow JJ, Ayala R, Monje M, Cross RS, Ramarathinam SH, Jenkins MR, Purcell AW. Pandey K, et al. Among authors: ramarathinam sh. Front Oncol. 2023 Aug 11;13:1192448. doi: 10.3389/fonc.2023.1192448. eCollection 2023. Front Oncol. 2023. PMID: 37637064 Free PMC article.
New insights and approaches for analyses of immunopeptidomes.
Illing PT, Ramarathinam SH, Purcell AW. Illing PT, et al. Among authors: ramarathinam sh. Curr Opin Immunol. 2022 Aug;77:102216. doi: 10.1016/j.coi.2022.102216. Epub 2022 Jun 15. Curr Opin Immunol. 2022. PMID: 35716458 Review.
Hydroxychloroquine inhibits the mitochondrial antioxidant system in activated T cells.
Kim ML, Hardy MY, Edgington-Mitchell LE, Ramarathinam SH, Chung SZ, Russell AK, Currie I, Sleebs BE, Purcell AW, Tye-Din JA, Wicks IP. Kim ML, et al. Among authors: ramarathinam sh. iScience. 2021 Nov 25;24(12):103509. doi: 10.1016/j.isci.2021.103509. eCollection 2021 Dec 17. iScience. 2021. PMID: 34934928 Free PMC article.
46 results