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Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal.
de Bruijn I, Kundra R, Mastrogiacomo B, Tran TN, Sikina L, Mazor T, Li X, Ochoa A, Zhao G, Lai B, Abeshouse A, Baiceanu D, Ciftci E, Dogrusoz U, Dufilie A, Erkoc Z, Garcia Lara E, Fu Z, Gross B, Haynes C, Heath A, Higgins D, Jagannathan P, Kalletla K, Kumari P, Lindsay J, Lisman A, Leenknegt B, Lukasse P, Madela D, Madupuri R, van Nierop P, Plantalech O, Quach J, Resnick AC, Rodenburg SYA, Satravada BA, Schaeffer F, Sheridan R, Singh J, Sirohi R, Sumer SO, van Hagen S, Wang A, Wilson M, Zhang H, Zhu K, Rusk N, Brown S, Lavery JA, Panageas KS, Rudolph JE, LeNoue-Newton ML, Warner JL, Guo X, Hunter-Zinck H, Yu TV, Pilai S, Nichols C, Gardos SM, Philip J; AACR Project GENIE BPC Core Team, AACR Project GENIE Consortium; Kehl KL, Riely GJ, Schrag D, Lee J, Fiandalo MV, Sweeney SM, Pugh TJ, Sander C, Cerami E, Gao J, Schultz N. de Bruijn I, et al. Among authors: wang a. Cancer Res. 2023 Dec 1;83(23):3861-3867. doi: 10.1158/0008-5472.CAN-23-0816. Cancer Res. 2023. PMID: 37668528 Free PMC article.
OncoTree: A Cancer Classification System for Precision Oncology.
Kundra R, Zhang H, Sheridan R, Sirintrapun SJ, Wang A, Ochoa A, Wilson M, Gross B, Sun Y, Madupuri R, Satravada BA, Reales D, Vakiani E, Al-Ahmadie HA, Dogan A, Arcila M, Zehir A, Maron S, Berger MF, Viaplana C, Janeway K, Ducar M, Sholl L, Dogan S, Bedard P, Surrey LF, Sanchez IH, Syed A, Rema AB, Chakravarty D, Suehnholz S, Nissan M, Iyer GV, Murali R, Bouvier N, Soslow RA, Hyman D, Younes A, Intlekofer A, Harding JJ, Carvajal RD, Sabbatini PJ, Abou-Alfa GK, Morris L, Janjigian YY, Gallagher MM, Soumerai TA, Mellinghoff IK, Hakimi AA, Fury M, Huse JT, Bagrodia A, Hameed M, Thomas S, Gardos S, Cerami E, Mazor T, Kumari P, Raman P, Shivdasani P, MacFarland S, Newman S, Waanders A, Gao J, Solit D, Schultz N. Kundra R, et al. Among authors: wang a. JCO Clin Cancer Inform. 2021 Feb;5:221-230. doi: 10.1200/CCI.20.00108. JCO Clin Cancer Inform. 2021. PMID: 33625877 Free PMC article.
Genome Nexus: A Comprehensive Resource for the Annotation and Interpretation of Genomic Variants in Cancer.
de Bruijn I, Li X, Sumer SO, Gross B, Sheridan R, Ochoa A, Wilson M, Wang A, Zhang H, Lisman A, Abeshouse A, Zhang E, Thum A, Sadagopan A, Heins Z, Kandoth C, Rodenburg S, Tan S, Lukasse P, van Hagen S, Fijneman RJA, Meijer GA, Schultz N, Gao J. de Bruijn I, et al. Among authors: wang a. JCO Clin Cancer Inform. 2022 Feb;6:e2100144. doi: 10.1200/CCI.21.00144. JCO Clin Cancer Inform. 2022. PMID: 35148171 Free PMC article.
Automated real-world data integration improves cancer outcome prediction.
Jee J, Fong C, Pichotta K, Tran TN, Luthra A, Waters M, Fu C, Altoe M, Liu SY, Maron SB, Ahmed M, Kim S, Pirun M, Chatila WK, de Bruijn I, Pasha A, Kundra R, Gross B, Mastrogiacomo B, Aprati TJ, Liu D, Gao J, Capelletti M, Pekala K, Loudon L, Perry M, Bandlamudi C, Donoghue M, Satravada BA, Martin A, Shen R, Chen Y, Brannon AR, Chang J, Braunstein L, Li A, Safonov A, Stonestrom A, Sanchez-Vela P, Wilhelm C, Robson M, Scher H, Ladanyi M, Reis-Filho JS, Solit DB, Jones DR, Gomez D, Yu H, Chakravarty D, Yaeger R, Abida W, Park W, O'Reilly EM, Garcia-Aguilar J, Socci N, Sanchez-Vega F, Carrot-Zhang J, Stetson PD, Levine R, Rudin CM, Berger MF, Shah SP, Schrag D, Razavi P, Kehl KL, Li BT, Riely GJ, Schultz N; MSK Cancer Data Science Initiative Group. Jee J, et al. Nature. 2024 Nov 6. doi: 10.1038/s41586-024-08167-5. Online ahead of print. Nature. 2024. PMID: 39506116
First Indication of Solar ^{8}B Neutrinos through Coherent Elastic Neutrino-Nucleus Scattering in PandaX-4T.
Bo Z, Chen W, Chen X, Chen Y, Cheng Z, Cui X, Fan Y, Fang D, Gao Z, Geng L, Giboni K, Guo X, Guo X, Guo Z, Han C, Han K, He C, He J, Huang D, Huang H, Huang J, Hou R, Hou Y, Ji X, Ji X, Ju Y, Li C, Li J, Li M, Li S, Li T, Li Z, Lin Q, Liu J, Lu C, Lu X, Luo L, Luo Y, Ma W, Ma Y, Mao Y, Meng Y, Ning X, Pang B, Qi N, Qian Z, Ren X, Shan D, Shang X, Shao X, Shen G, Shen M, Sun W, Tao Y, Wang A, Wang G, Wang H, Wang J, Wang L, Wang M, Wang Q, Wang S, Wang S, Wang W, Wang X, Wang X, Wang Z, Wei Y, Wu W, Wu Y, Xiao M, Xiao X, Xiong K, Xu Y, Yao S, Yan B, Yan X, Yang Y, Ye P, Yu C, Yuan Y, Yuan Z, Yun Y, Zeng X, Zhang M, Zhang P, Zhang S, Zhang S, Zhang T, Zhang W, Zhang Y, Zhang Y, Zhang Y, Zhao L, Zhou J, Zhou J, Zhou J, Zhou N, Zhou X, Zhou Y, Zhou Z; PandaX Collaboration. Bo Z, et al. Among authors: wang a. Phys Rev Lett. 2024 Nov 8;133(19):191001. doi: 10.1103/PhysRevLett.133.191001. Phys Rev Lett. 2024. PMID: 39576898
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