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A complete assembly of the rice Nipponbare reference genome.
Shang L, He W, Wang T, Yang Y, Xu Q, Zhao X, Yang L, Zhang H, Li X, Lv Y, Chen W, Cao S, Wang X, Zhang B, Liu X, Yu X, He H, Wei H, Leng Y, Shi C, Guo M, Zhang Z, Zhang B, Yuan Q, Qian H, Cao X, Cui Y, Zhang Q, Dai X, Liu C, Guo L, Zhou Y, Zheng X, Ruan J, Cheng Z, Pan W, Qian Q. Shang L, et al. Among authors: li x. Mol Plant. 2023 Aug 7;16(8):1232-1236. doi: 10.1016/j.molp.2023.08.003. Epub 2023 Aug 7. Mol Plant. 2023. PMID: 37553831 Free article. No abstract available.
A super pan-genomic landscape of rice.
Shang L, Li X, He H, Yuan Q, Song Y, Wei Z, Lin H, Hu M, Zhao F, Zhang C, Li Y, Gao H, Wang T, Liu X, Zhang H, Zhang Y, Cao S, Yu X, Zhang B, Zhang Y, Tan Y, Qin M, Ai C, Yang Y, Zhang B, Hu Z, Wang H, Lv Y, Wang Y, Ma J, Wang Q, Lu H, Wu Z, Liu S, Sun Z, Zhang H, Guo L, Li Z, Zhou Y, Li J, Zhu Z, Xiong G, Ruan J, Qian Q. Shang L, et al. Among authors: li y, li z, li j, li x. Cell Res. 2022 Oct;32(10):878-896. doi: 10.1038/s41422-022-00685-z. Epub 2022 Jul 12. Cell Res. 2022. PMID: 35821092 Free PMC article.
A centromere map based on super pan-genome highlights the structure and function of rice centromeres.
Lv Y, Liu C, Li X, Wang Y, He H, He W, Chen W, Yang L, Dai X, Cao X, Yu X, Liu J, Zhang B, Wei H, Zhang H, Qian H, Shi C, Leng Y, Liu X, Guo M, Wang X, Zhang Z, Wang T, Zhang B, Xu Q, Cui Y, Zhang Q, Yuan Q, Jahan N, Ma J, Zheng X, Zhou Y, Qian Q, Guo L, Shang L. Lv Y, et al. Among authors: li x. J Integr Plant Biol. 2024 Feb;66(2):196-207. doi: 10.1111/jipb.13607. Epub 2024 Jan 29. J Integr Plant Biol. 2024. PMID: 38158885
Widespread inversions shape the genetic and phenotypic diversity in rice.
He W, He H, Yuan Q, Zhang H, Li X, Wang T, Yang Y, Yang L, Yang Y, Liu X, Wei H, Zhang H, Zhang B, Guo M, Leng Y, Shi C, Lv Y, Chen W, Wang X, Zhang Z, Yu B, Zhang B, Xu Q, Qian H, Zhou Y, Wang S, Qian Q, Shang L. He W, et al. Among authors: li x. Sci Bull (Beijing). 2024 Mar 15;69(5):593-596. doi: 10.1016/j.scib.2023.12.048. Epub 2023 Dec 29. Sci Bull (Beijing). 2024. PMID: 38233278 Free article. No abstract available.
Uncovering key salt-tolerant regulators through a combined eQTL and GWAS analysis using the super pan-genome in rice.
Wei H, Wang X, Zhang Z, Yang L, Zhang Q, Li Y, He H, Chen D, Zhang B, Zheng C, Leng Y, Cao X, Cui Y, Shi C, Liu Y, Lv Y, Ma J, He W, Liu X, Xu Q, Yuan Q, Yu X, Wang T, Qian H, Li X, Zhang B, Zhang H, Chen W, Guo M, Dai X, Wang Y, Zheng X, Guo L, Xie X, Qian Q, Shang L. Wei H, et al. Among authors: li y, li x. Natl Sci Rev. 2024 Feb 5;11(4):nwae043. doi: 10.1093/nsr/nwae043. eCollection 2024 Apr. Natl Sci Rev. 2024. PMID: 38650829 Free PMC article.
Population-level exploration of alternative splicing and its unique role in controlling agronomic traits of rice.
Zhang H, Chen W, Zhu D, Zhang B, Xu Q, Shi C, He H, Dai X, Li Y, He W, Lv Y, Yang L, Cao X, Cui Y, Leng Y, Wei H, Liu X, Zhang B, Wang X, Guo M, Zhang Z, Li X, Liu C, Yuan Q, Wang T, Yu X, Qian H, Zhang Q, Chen D, Hu G, Qian Q, Shang L. Zhang H, et al. Among authors: li y, li x. Plant Cell. 2024 Oct 3;36(10):4372-4387. doi: 10.1093/plcell/koae181. Plant Cell. 2024. PMID: 38916914
A Review of Pedal Peptide/Orcokinin-type Neuropeptides.
Wang P, Cui Q, Zhang Y, Wang X, Huang X, Li X, Zhao Q, Lei G, Li B, Wei W. Wang P, et al. Among authors: li x, li b. Curr Protein Pept Sci. 2021;22(1):41-49. doi: 10.2174/1389203721666201109112758. Curr Protein Pept Sci. 2021. PMID: 33167831 Review.
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