Rubin J - Search Results

1

PyInteraph2 and PyInKnife2 to Analyze Networks in Protein Structural Ensembles.

Sora V, Tiberti M, Beltrame L, Dogan D, Robbani SM, Rubin J, Papaleo E. Sora V, et al. Among authors: rubin j. J Chem Inf Model. 2023 Jul 24;63(14):4237-4245. doi: 10.1021/acs.jcim.3c00574. Epub 2023 Jul 12. J Chem Inf Model. 2023. PMID: 37437128

2

HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph.

Rubin JD, Vogel NA, Gopalakrishnan S, Sackett PW, Renaud G. Rubin JD, et al. PLoS Comput Biol. 2023 Jun 7;19(6):e1011148. doi: 10.1371/journal.pcbi.1011148. eCollection 2023 Jun. PLoS Comput Biol. 2023. PMID: 37285390 Free PMC article.

3

soibean: High-Resolution Taxonomic Identification of Ancient Environmental DNA Using Mitochondrial Pangenome Graphs.

Vogel NA, Rubin JD, Pedersen AG, Sackett PW, Pedersen MW, Renaud G. Vogel NA, et al. Among authors: rubin jd. Mol Biol Evol. 2024 Oct 4;41(10):msae203. doi: 10.1093/molbev/msae203. Mol Biol Evol. 2024. PMID: 39361595 Free PMC article.

4

Bone Density Correlates With Depth of Subsidence After Expandable Interbody Cage Placement: A Biomechanical Analysis.

Katz AD, Song J, Duvvuri P, Shahsavarani S, Ngan A, Zappia L, Nuckley D, Coldren V, Rubin J, Essig D, Silber J, Qureshi SA, Virk S. Katz AD, et al. Among authors: rubin j. Clin Spine Surg. 2024 Nov 21. doi: 10.1097/BSD.0000000000001727. Online ahead of print. Clin Spine Surg. 2024. PMID: 39569881

5

Arkypallidal neurons in the external globus pallidus can mediate inhibitory control by altering competition in the striatum.

Giossi C, Bahuguna J, Rubin JE, Verstynen T, Vich C. Giossi C, et al. Among authors: rubin je. Proc Natl Acad Sci U S A. 2024 Nov 19;121(47):e2408505121. doi: 10.1073/pnas.2408505121. Epub 2024 Nov 13. Proc Natl Acad Sci U S A. 2024. PMID: 39536079

6

Introducing the STReaC (Spike Train Response Classification) toolbox.

Parker JE, Aristieta A, Gittis A, Rubin JE. Parker JE, et al. Among authors: rubin je. J Neurosci Methods. 2023 Oct 28:110000. doi: 10.1016/j.jneumeth.2023.110000. Online ahead of print. J Neurosci Methods. 2023. PMID: 39492426

7

The Effect of Preformed Anatomic Provisional Restorations on Peri-Implant Mucosal Dimensions with Immediate Tooth Replacement Therapy.

Saito H, Song SJ, Rubin J, Tarnow DP, Chu SJ. Saito H, et al. Among authors: rubin j. J Esthet Restor Dent. 2024 Oct 29. doi: 10.1111/jerd.13334. Online ahead of print. J Esthet Restor Dent. 2024. PMID: 39473118

8

SAFARI: Pangenome Alignment of Ancient DNA Using Purine/Pyrimidine Encodings.

Rubin J, van Waaij J, Kraft L, Sirén J, Sackett PW, Renaud G. Rubin J, et al. bioRxiv [Preprint]. 2024 Oct 8:2024.08.12.607489. doi: 10.1101/2024.08.12.607489. bioRxiv. 2024. PMID: 39415996 Free PMC article. Preprint.

9

Men and women demonstrate comparable rates of failures and reoperations following primary osteochondral allograft transplantation of the knee, but women undergo reoperation sooner.

Yazdi AA, Weissman AC, Wagner KR, Muth SA, Rubin JM, Gilat R, Cole BJ. Yazdi AA, et al. Among authors: rubin jm. Knee Surg Sports Traumatol Arthrosc. 2024 Oct;32(10):2622-2634. doi: 10.1002/ksa.12507. Epub 2024 Oct 13. Knee Surg Sports Traumatol Arthrosc. 2024. PMID: 39396150

10

An Unexpected Finding While Troubleshooting Mechanical Ventilation With Point-of-Care Ultrasound.

Padrao EMH, Gardner TA, Jamali H, Dickey AK, Rubin J. Padrao EMH, et al. Among authors: rubin j. Chest. 2024 Oct;166(4):e121-e123. doi: 10.1016/j.chest.2024.04.029. Chest. 2024. PMID: 39389694 No abstract available.

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